Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2701 bp · TkAUNG074730|TK1151|cDNA
ATAGAAAAATCTCAACAAAACCCTTCCATTTTGTCTGCAAATTTAACTCATGCCTTGACTGCATATGGAGAAGTAGCCGCCACATCCTTTCTCTCTTCCTCCTCCCCACCAATCTCAGACCATGTTGCGTACAAAACAGATAGGTGTTCTTTCCCAATCCGCCAGGTCTTTCTTCTTCAGTGGAACAAGATGTAGTGCAGATGGAAGTTCATGCACTTGTCCAGAAGATGAAGCTTGCACTTCCAAGAGGCAAATCTCAA...
2412 bp · TkAUNG074730|TK1151|CDS
ATGTTGCGTACAAAACAGATAGGTGTTCTTTCCCAATCCGCCAGGTCTTTCTTCTTCAGTGGAACAAGATGTAGTGCAGATGGAAGTTCATGCACTTGTCCAGAAGATGAAGCTTGCACTTCCAAGAGGCAAATCTCAACCACAAATCAAACCCAAAATCCACAAACAACATCCACCTTGGTTCCCATTCCCAAATCTTCCATTAAACCCGATACCAAGATAGTTGACCATACATCAAAGTCAACCTCCTTATCAAAACC...
Protein
Download Protein FASTA803 aa · TkAUNG074730|TK1151|PROTEIN
MLRTKQIGVLSQSARSFFFSGTRCSADGSSCTCPEDEACTSKRQISTTNQTQNPQTTSTLVPIPKSSIKPDTKIVDHTSKSTSLSKPDCVTYADEIDTIQPSGITTGHFVRAGIAAVNFLNDVVNYKIPMTNESSQNYVVDHARPRPIVKPYKKSVPETTNSSNNSSNVKVHKKIEPQTPPPKTTPNVGKPRVSGKTVANCQNHNTKRSKDCVNQFMVTRSISTKFVSQTGRQFSGPGSGSGHMVETVCRILRQPKWGPG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG074730 |
|---|---|
| TK1151 ID | TkAUNG074730 |
| OH-1004 ID | LXL04_037103 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 25.000 |
| Protein coverage (%) | TK1151 20.423 / OH-1004 17.608Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG074730 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:21522138-21525389 (+) | |||||||||
| Description | Similar to At2g31400: Pentatricopeptide repeat-containing protein At2g31400, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0010019 chloroplast-nucleus signaling pathway Biological Process GO:0031930 mitochondria-nucleus signaling pathway Biological Process GO:0042793 plastid transcription Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0009507 chloroplast Cellular Component GO:0042644 chloroplast nucleoid Cellular Component GO:0003677 DNA binding Molecular Function GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G74850 ath:AT2G31400 ath:AT5G02860 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01692Paramyxo_C34-91 aaPF12854PPR_186-92 aaPF01692Paramyxo_C132-197 aaPF01692Paramyxo_C162-224 aaPF29070MSC6_N301-331 aaPF13812PPR_3302-353 aaPF13041PPR_2308-350 aaPF12854PPR_1308-315 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG074730 | PF01692 | Paramyxo_C | 34 | 91 | 9.2 | 6.7 |
| TkAUNG074730 | PF12854 | PPR_1 | 86 | 92 | 1.5e-46 | 156.5 |
| TkAUNG074730 | PF01692 | Paramyxo_C | 132 | 197 | 9.2 | 6.7 |
| TkAUNG074730 | PF01692 | Paramyxo_C | 162 | 224 | 9.2 | 6.7 |
| TkAUNG074730 | PF29070 | MSC6_N | 301 | 331 | 2.2e-16 | 60.6 |
| TkAUNG074730 | PF13812 | PPR_3 | 302 | 353 | 2.7e-49 | 165.8 |
| TkAUNG074730 | PF13041 | PPR_2 | 308 | 350 | 4.3e-72 | 238.7 |
| TkAUNG074730 | PF12854 | PPR_1 | 308 | 315 | 1.5e-46 | 156.5 |
| TkAUNG074730 | PF17177 | PPR_long | 308 | 391 | 2.1e-24 | 86.8 |
| TkAUNG074730 | PF01535 | PPR | 309 | 337 | 1.6e-50 | 166.5 |
| TkAUNG074730 | PF29070 | MSC6_N | 320 | 434 | 2.2e-16 | 60.6 |
| TkAUNG074730 | PF29978 | ATP18_TPR | 321 | 350 | 0.065 | 13.8 |
| TkAUNG074730 | PF13812 | PPR_3 | 328 | 386 | 2.7e-49 | 165.8 |
| TkAUNG074730 | PF12854 | PPR_1 | 328 | 334 | 1.5e-46 | 156.5 |
| TkAUNG074730 | PF06239 | ECSIT_N | 328 | 404 | 5.9e-05 | 23.1 |
| TkAUNG074730 | PF23276 | TPR_24 | 335 | 436 | 7e-18 | 65.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.