TkAUNG067570 | RubberDandelionOmics

Gene overview

TkAUNG067570

Reference: TK1151 Chr: ChrUn Coordinates: 19628514-19631755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1219 bp · TkAUNG067570|TK1151|cDNA

CGACATTTCTCCCTTTTTCTCTATATATGGGACTGAAAGAAACGAAAAGTAAATTCACATACCTTTTTTATTTGTGAGAAAGAGATTGCTATCAACACATAGAAAAAGAAAAGGAGAGAAGCCTTCTTAAGCTTAATCTATGTTTTGATTGTTTGTTCTAAACTTTCTTCCTCTTTCAATTTAAGTGTGAGAAAAGCAATTTAGCGTAGCAATGGATGTGAGGCAAATCATGGGAGCAGTTCTTACATTCTCCATGTTCG...

CDS

Download CDS FASTA

1008 bp · TkAUNG067570|TK1151|CDS

ATGGATGTGAGGCAAATCATGGGAGCAGTTCTTACATTCTCCATGTTCGTGATGCTTGGTAACATGATCAAAAGAGATCACTTTGATGGCGATGTTTTGCTCGATGTCCCCGTGGTAGCGAATGTCCCCGTGGTAGCAAATGTTGAACAAGATAATCTCGTCAAAGTTGAACAAGATAACCTCTACAAAGTGTATAGGCATAGTCTTCTTCAACTTCCTAATGAAGCATCAAAAGCCGGTCAGCGGTTAAAACTTTGTTG...

Protein

Download Protein FASTA

336 aa · TkAUNG067570|TK1151|PROTEIN

MDVRQIMGAVLTFSMFVMLGNMIKRDHFDGDVLLDVPVVANVPVVANVEQDNLVKVEQDNLYKVYRHSLLQLPNEASKAGQRLKLCWNNSLKPKERAPSKGFVTFSLTNGPEYHVSQIANAVLVAKHLGATLVLPEIIGNQGEKRSFEEIYDVEKFVTSMNGLIQVERRKSPESSTQKSVTVKVPYNANRNYIKTNIEPLFQSSRNLRVITYFPSLTAREGKVDKGMNPYSCWATFEALQLKPELQQVMDSIVGRLRKGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG067570`
TK1151 ID	TkAUNG067570
OH-1004 ID	LXL04_002961
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	76.300
Protein coverage (%)	TK1151 100.000 / OH-1004 83.142 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG067570

Location ChrUn:19628514-19631755 (-)

Description Similar to MSR1: Protein MANNAN SYNTHESIS-RELATED 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21190`	Glycosyltransferase involved in mannan biosynthesis.	Identification of an additional protein involved in mannan biosynthesis.2013 · DOI: 10.1111/tpj.12019
`At1g51630`	Glycosyltransferase involved in mannan biosynthesis.	Identification of an additional protein involved in mannan biosynthesis.2013 · DOI: 10.1111/tpj.12019
`At3g26370`	Glycosyltransferase involved in the biosynthesis of pectic type-II arabinogalactans.	A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans.2016 · DOI: 10.1186/s12870-016-0780-x
`At4g16650`	O-fucosyltransferase 29.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002961 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0046354 mannan biosynthetic process Biological Process

GO:0052325 cell wall pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G38065

ath:AT1G38131

ath:AT1G51630

ath:AT3G21190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.810

Rank 1 · TkAUNG067570 · TK1151

Endoplasmic reticulum0.075

Rank 2 · TkAUNG067570 · TK1151

Cell membrane0.062

Rank 3 · TkAUNG067570 · TK1151

Extracellular0.062

Rank 4 · TkAUNG067570 · TK1151

Cytoplasm0.055

Rank 5 · TkAUNG067570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250O-FucT116-335 aa

PF22994RSC4_Ig_like141-161 aa

PF22994RSC4_Ig_like173-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG067570	`PF10250`	O-FucT	116	335	8.8e-17	62.5
TkAUNG067570	`PF22994`	RSC4_Ig_like	141	161	0.0057	16.9
TkAUNG067570	`PF22994`	RSC4_Ig_like	173	213	0.0057	16.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LU40`	Arabidopsis thaliana	sp\|Q9LU40\|MSR1_ARATH Protein MANNAN SYNTHESIS-RELATED 1	40.200%	Swiss-Prot	Medium
`Q0WPA5`	Arabidopsis thaliana	sp\|Q0WPA5\|MSR2_ARATH Protein MANNAN SYNTHESIS-RELATED 2	39.900%	Swiss-Prot	Medium
`Q9LIN9`	Arabidopsis thaliana	sp\|Q9LIN9\|PAGR_ARATH Protein PECTIC ARABINOGALACTAN SYNTHESIS-RELATED	27.500%	Swiss-Prot	Low
`Q8LPF8`	Arabidopsis thaliana	sp\|Q8LPF8\|OFT29_ARATH O-fucosyltransferase 29	25.100%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card