TkAUNG060730 | RubberDandelionOmics

Gene overview

TkAUNG060730

Reference: TK1151 Chr: ChrUn Coordinates: 17658566-17663802 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3664 bp · TkAUNG060730|TK1151|cDNA

CACAAAACCCAAAACCCTACTCCTGTAAACCTCTCACACACTTCGTCCATTTCCAGTTCTCACCTCCTGACACTCACACACAGGGAGAGTGACTGTAATCACCATGGAAATCAAGAAGCCATTAACGGATTAGCCTTCTTCTTGCCGTTTTCAATTCTAATTTGGTGAGATGTCGAACAAACAATCTCGAGGCAAGCAGCAAATTCCTCGGAAGAAATGTAATGAAAAGGGTATTAAGGTTGCCGCCAATTCGAATGTTC...

CDS

Download CDS FASTA

2394 bp · TkAUNG060730|TK1151|CDS

ATGTTAGTAGATGATGAAGAACTGGAATTAAGAGAACTACAAGCAACATCAAATCCACTCACATGTTGTGCTCATTGTGCAGCCAATAGGCTGCATGGCTGTTCCCTTTGTAAAGACTTGCTGGCAAAGTTCCCTCCAGACTCTATCAGAATGAAGCAACCATTGCATTTCCAACCATGGGATTCATCTCCACAACTTGTCAAAAAACTTTTTAAGATATTTCACTTTATTAGCACTTATGCTGTAATAATCGGTATCCA...

Protein

Download Protein FASTA

797 aa · TkAUNG060730|TK1151|PROTEIN

MLVDDEELELRELQATSNPLTCCAHCAANRLHGCSLCKDLLAKFPPDSIRMKQPLHFQPWDSSPQLVKKLFKIFHFISTYAVIIGIQSFTLDDLAQSFIDKDSMLLGKINVALLKLLLAGIEKEIDSEFVSHISKNWKYRGLLQSIGREESDLELWKRSLNSLTWIEILRQVLVAAGFGSKRDTSSKEPVNKEAALMASYGLSPGTLKGELFTILSSQGNNGMKVSELATFSSIIELKLATTTDDIEQSISSMLSSDITL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG060730`
TK1151 ID	TkAUNG060730
OH-1004 ID	LXL04_012772
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 74.278 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG060730

Location ChrUn:17658566-17663802 (-)

Description Similar to RLT3: Homeobox-DDT domain protein RLT3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12750`	Transcriptional regulator required for the maintenance of the plant vegetative phase.	No verified direct reference in this release
`At5g44180`	Transcriptional regulator required for the maintenance of the plant vegetative phase.	Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05074.x Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112714
`At1g28420`	Transcriptional regulator required for the maintenance of the plant vegetative phase.	Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05074.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012772 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009908 flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005667 transcription regulator complex Cellular Component

GO:0031010 ISWI-type complex Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

KEGG gene cross-reference

ath:AT1G28420

ath:AT5G44180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.943

Rank 1 · TkAUNG060730 · TK1151

Cytoplasm0.117

Rank 2 · TkAUNG060730 · TK1151

Cell membrane0.032

Rank 3 · TkAUNG060730 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkAUNG060730 · TK1151

Plastid0.012

Rank 5 · TkAUNG060730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02791DDT66-118 aa

PF31066DUF8799110-138 aa

PF15612WHIM1341-376 aa

PF15613WSD449-522 aa

PF31066DUF8799602-620 aa

PF31066DUF8799671-731 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG060730	`PF02791`	DDT	66	118	5e-10	40.0
TkAUNG060730	`PF31066`	DUF8799	110	138	5.3e-12	46.1
TkAUNG060730	`PF15612`	WHIM1	341	376	1.5e-06	28.3
TkAUNG060730	`PF15613`	WSD	449	522	4.9e-20	72.2
TkAUNG060730	`PF31066`	DUF8799	602	620	5.3e-12	46.1
TkAUNG060730	`PF31066`	DUF8799	671	731	5.3e-12	46.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JRF5`	Arabidopsis thaliana	sp\|F4JRF5\|RLT3_ARATH Homeobox-DDT domain protein RLT3	48.500%	Swiss-Prot	Medium
`Q9FFH1`	Arabidopsis thaliana	sp\|Q9FFH1\|RLT2_ARATH Homeobox-DDT domain protein RLT2	25.100%	Swiss-Prot	Low
`F4HY56`	Arabidopsis thaliana	sp\|F4HY56\|RLT1_ARATH Homeobox-DDT domain protein RLT1	27.800%	Swiss-Prot	Low

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