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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG055980
Reference: TK1151 Chr: ChrUn Coordinates: 15935507-15937274 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1342 bp · TkAUNG055980|TK1151|cDNA

AAGAACATCAAGAAAACCTTCAATGGCATCTTCTGCAAATTCATCCAGTCAAAAGAGCTTTAAGTATCACGTGTTCTTAAGCTTTAGAGGAGAAGACACAAGAAAGACCTTAGTTGATCATCTTTACAGTTCTCTTAAGCAACTAGGTATTCATACCTTCAGGGATAACGAGGAACTCGAGAAAGGAAAGCAGATCGATGAGCTATTCAAGGCCATTGAAGAGTCAAAGTTCTTTATCATTATTTTCTCGAAAAGCTATG...

CDS

Download CDS FASTA

1320 bp · TkAUNG055980|TK1151|CDS

ATGGCATCTTCTGCAAATTCATCCAGTCAAAAGAGCTTTAAGTATCACGTGTTCTTAAGCTTTAGAGGAGAAGACACAAGAAAGACCTTAGTTGATCATCTTTACAGTTCTCTTAAGCAACTAGGTATTCATACCTTCAGGGATAACGAGGAACTCGAGAAAGGAAAGCAGATCGATGAGCTATTCAAGGCCATTGAAGAGTCAAAGTTCTTTATCATTATTTTCTCGAAAAGCTATGCATCTTCCTCTTGGTGCTTGAA...

Protein

Download Protein FASTA

440 aa · TkAUNG055980|TK1151|PROTEIN

MASSANSSSQKSFKYHVFLSFRGEDTRKTLVDHLYSSLKQLGIHTFRDNEELEKGKQIDELFKAIEESKFFIIIFSKSYASSSWCLKEVAKIMECQDGNEQIAYPLFYDVDPTDIRKQSGPVGRAIAKHKTNKQIKKWEKALEGAGNLVGWDLKNVANGHEAEAVNQIVKEISLKLRSIHLRNDENVIGIDRWMQDLESLLGIGLNDKARMIGIKGMGGIGKTTLARAIFDRVSSHFEGSIFVEDVREVSKKKGLRSLQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG055980
TK1151 IDTkAUNG055980
OH-1004 IDLXL04_010641
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.900
Protein coverage (%)TK1151 100.000 / OH-1004 41.470
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG055980
LocationChrUn:15935507-15937274 (+)
DescriptionSimilar to RPV1: Disease resistance protein RPV1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12010 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010641 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.428
Rank 1 · TkAUNG055980 · TK1151
Cytoplasm0.377
Rank 2 · TkAUNG055980 · TK1151
Nucleus0.148
Rank 3 · TkAUNG055980 · TK1151
Endoplasmic reticulum0.097
Rank 4 · TkAUNG055980 · TK1151
Extracellular0.047
Rank 5 · TkAUNG055980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09960DUF21944-84 aa
PF00931NB-ARC7-74 aa
PF13401AAA_228-41 aa
PF05729NACHT10-39 aa
PF01582TIR14-182 aa
PF24883NPHP3_N16-45 aa
PF13676TIR_217-112 aa
PF08357SEFIR17-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG055980PF09960DUF21944840.07512.1
TkAUNG055980PF00931NB-ARC7743e-2486.2
TkAUNG055980PF13401AAA_228410.003318.5
TkAUNG055980PF05729NACHT10391.2e-0526.0
TkAUNG055980PF01582TIR141822.6e-47161.7
TkAUNG055980PF24883NPHP3_N16450.01716.0
TkAUNG055980PF13676TIR_2171121.6e-1558.3
TkAUNG055980PF08357SEFIR17790.07114.1
TkAUNG055980PF01637ATPase_227730.0001222.7
TkAUNG055980PF04851ResIII27770.02415.3
TkAUNG055980PF13173AAA_1430720.01516.0
TkAUNG055980PF13855LRR_836530.2511.8
TkAUNG055980PF00004AAA37740.04914.8
TkAUNG055980PF20720nSTAND348700.00617.0
TkAUNG055980PF13238AAA_181251820.08514.1
TkAUNG055980PF04851ResIII1622540.02415.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ66Arabidopsis thalianasp|Q9SZ66|DSC1_ARATH Disease resistance-like protein DSC139.600%Swiss-ProtMedium

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