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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG053060
Reference: TK1151 Chr: ChrUn Coordinates: 15155210-15159915 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2811 bp · TkAUNG053060|TK1151|cDNA

AGCCTAATTTGATGCATTATCTCGAAGCTTCAACACCCAATACCATTTTAAAGTTTTAAACCCACAAAACACCATGGAATCCTAAAACCCTCCGATAATCTTGTCTGAAGTCTGAACCTCACTGTGCGTCCATCAAGATGATGTCCATAACAACTCCTCATTTCAAATTCGGTATTTCCATTTCTCAAATTCAATCCCATGTTGAAACATCTTCGATGATTTTAAAAACCTCAAGAACCAGAAGAAAATTTCAAAATTCA...

CDS

Download CDS FASTA

2457 bp · TkAUNG053060|TK1151|CDS

ATGATGTCCATAACAACTCCTCATTTCAAATTCGGTATTTCCATTTCTCAAATTCAATCCCATGTTGAAACATCTTCGATGATTTTAAAAACCTCAAGAACCAGAAGAAAATTTCAAAATTCACATCCATCGTCTTCATTCAATTCGTTAAACGTGAAACTACGCTCTGTACGTCAAGTCATCACAAGAATCAGCTGCAGCAGTGACAGCGGCGACACATTCCATGACGGTACTCCACAAAAAGTTTCCGATGATATCTC...

Protein

Download Protein FASTA

818 aa · TkAUNG053060|TK1151|PROTEIN

MMSITTPHFKFGISISQIQSHVETSSMILKTSRTRRKFQNSHPSSSFNSLNVKLRSVRQVITRISCSSDSGDTFHDGTPQKVSDDISDYKANSSPNSGDAYVGMFIRMLGLDNDILDREQAVDALWKYSLGGKQCVDAIMKSRGSVFLTVNLLNSESTIACEAAAGLLRTISSVNIYRDFVAESGAIQEITSLLRRPSLTSEIKEQSLCLLANLSVDEKLRLQIANTDLLPLLIKFLDDEEDMKVIEASGGVLANLALSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG053060
TK1151 IDTkAUNG053060
OH-1004 IDLXL04_021213
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.400
Protein coverage (%)TK1151 99.267 / OH-1004 96.568
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG053060
LocationChrUn:15155210-15159915 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000209 protein polyubiquitination Biological Process
GO:0000578 embryonic axis specification Biological Process
GO:0000902 cell morphogenesis Biological Process
GO:0001708 cell fate specification Biological Process
GO:0001709 cell fate determination Biological Process
GO:0001894 tissue homeostasis Biological Process
GO:0002053 positive regulation of mesenchymal cell proliferation Biological Process
GO:0003094 glomerular filtration Biological Process
GO:0003401 axis elongation Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
KEGG gene cross-reference
bta:539003
cfa:477032
mmu:12387
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.334
Rank 1 · TkAUNG053060 · TK1151
Cytoplasm0.290
Rank 2 · TkAUNG053060 · TK1151
Plastid0.197
Rank 3 · TkAUNG053060 · TK1151
Cell membrane0.180
Rank 4 · TkAUNG053060 · TK1151
Endoplasmic reticulum0.065
Rank 5 · TkAUNG053060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13646HEAT_2112-140 aa
PF00514Arm118-126 aa
PF24768ARM_ARMC5138-196 aa
PF00514Arm150-173 aa
PF13513HEAT_EZ150-170 aa
PF02985HEAT151-173 aa
PF11698V-ATPase_H_C152-211 aa
PF25598ARM_PUB154-284 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG053060PF13646HEAT_21121402.9e-0834.6
TkAUNG053060PF00514Arm1181263.8e-1968.7
TkAUNG053060PF24768ARM_ARMC51381968.6e-2278.6
TkAUNG053060PF00514Arm1501733.8e-1968.7
TkAUNG053060PF13513HEAT_EZ1501700.0001622.8
TkAUNG053060PF02985HEAT1511732.09.6
TkAUNG053060PF11698V-ATPase_H_C1522110.4411.4
TkAUNG053060PF25598ARM_PUB1542841.6e-1144.9
TkAUNG053060PF00514Arm1782153.8e-1968.7
TkAUNG053060PF22964ZER1-like_2nd1792650.0001721.0
TkAUNG053060PF29853SYS1_M1842570.03214.6
TkAUNG053060PF13513HEAT_EZ2032540.0001622.8
TkAUNG053060PF24768ARM_ARMC52072858.6e-2278.6
TkAUNG053060PF05804KAP2072852.4e-0523.5
TkAUNG053060PF00514Arm2202573.8e-1968.7
TkAUNG053060PF13646HEAT_22232932.9e-0834.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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