TkAUNG044970 | RubberDandelionOmics

Gene overview

TkAUNG044970

Reference: TK1151 Chr: ChrUn Coordinates: 12506749-12511061 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2741 bp · TkAUNG044970|TK1151|cDNA

CTCGACTAAACTTTAACACCTGGTATTTGAACTGTTTCTTTGCCCTCTCTAGTTTTTTGAATTTCCAGTGGACCGTTTATTCTCTCTCCTACGAAGAAAAACTCCATCCCTGCCGGCGTGTGTCCGATCGCAGATCTATCAGGGCTTTGGTTATTTGTCATTCTAATTTCGTGGTTAGATCATCGAGCGCGGTTAGTTTAGCTTCTTTTACCAAGCCCTAGTAACTGATAATGCTTTTGGGGGCACGGTACATAGAGCAA...

CDS

Download CDS FASTA

2211 bp · TkAUNG044970|TK1151|CDS

ATGGAAAGCGATTTGGCAATGATGGGTTCTTCTGATGGCCTCAGCAAACCACTTCAGAAAATGCGATCTTTAAATGGGAGGACTAGTGGCCCTACAAGACGTTCCACAAAGGGGCAGTGGTCTGCAGAAGAGGATGAGATTTTATGTAAAGCTGTTCAGCAATTTAATGGAAAGAACTGGAAAAAAATAGCCGAGTGTTTCAAGGATCGAACAGATGTTCAGTGCCTGCATCGGTGGCAGAAAGTTTTGAACCCCGAGCT...

Protein

Download Protein FASTA

736 aa · TkAUNG044970|TK1151|PROTEIN

MESDLAMMGSSDGLSKPLQKMRSLNGRTSGPTRRSTKGQWSAEEDEILCKAVQQFNGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIVRLVDQYGAKKWSTIAQHLPGRIGKQCRERWHNHLNPNINKEAWSQEEEIALIHAHQVYGNKWAELTKFLPGRSDNAIKNHWNSSVKKKLDSYLASGLLPQSQGLPLPPPPVTNHHPSQSSASTSWAQQQQQHSGDESIRKDVTETEDISESSQMSLPVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG044970`
TK1151 ID	TkAUNG044970
OH-1004 ID	LXL04_003663
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG044970

Location ChrUn:12506749-12511061 (+)

Description Similar to MYB3R1: Transcription factor MYB3R-1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11510`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters.	R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.02801 Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators.2010 · DOI: 10.1073/pnas.0912492107 Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis.2011 · DOI: 10.1104/pp.111.180836 Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.2015 · DOI: 10.4161/15592324.2014.990817
`At4g32730`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters.	R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.02801 Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis.2011 · DOI: 10.1104/pp.111.180836
`At3g09370`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity).	Transcriptional repression by MYB3R proteins regulates plant organ growth.2015 · DOI: 10.15252/embj.201490899
`At5g02320`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0841500`	Transcription factor involved in abiotic stress responses.	Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis.2007 · DOI: 10.1104/pp.106.094532 Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes.2009 · DOI: 10.1104/pp.108.133454

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003663 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009620 response to fungus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0032465 regulation of cytokinesis Biological Process

GO:0032875 regulation of DNA endoreduplication Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1901181 negative regulation of cellular response to caffeine Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT4G32730

ath:AT5G11510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.930

Rank 1 · TkAUNG044970 · TK1151

Cytoplasm0.201

Rank 2 · TkAUNG044970 · TK1151

Cell membrane0.024

Rank 3 · TkAUNG044970 · TK1151

Mitochondrion0.019

Rank 4 · TkAUNG044970 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkAUNG044970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09111SLIDE32-69 aa

PF15963Myb_DNA-bind_733-80 aa

PF11626Rap1_C34-80 aa

PF00249Myb_DNA-binding37-83 aa

PF17884DUF559137-59 aa

PF23082Myb_DNA-binding_239-75 aa

PF13921Myb_DNA-bind_640-98 aa

PF11626Rap1_C84-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG044970	`PF09111`	SLIDE	32	69	0.0018	19.0
TkAUNG044970	`PF15963`	Myb_DNA-bind_7	33	80	5.3e-08	33.3
TkAUNG044970	`PF11626`	Rap1_C	34	80	0.61	10.9
TkAUNG044970	`PF00249`	Myb_DNA-binding	37	83	3.5e-51	171.8
TkAUNG044970	`PF17884`	DUF5591	37	59	0.097	13.2
TkAUNG044970	`PF23082`	Myb_DNA-binding_2	39	75	0.043	14.6
TkAUNG044970	`PF13921`	Myb_DNA-bind_6	40	98	1.2e-40	138.2
TkAUNG044970	`PF11626`	Rap1_C	84	101	0.61	10.9
TkAUNG044970	`PF17884`	DUF5591	88	130	0.097	13.2
TkAUNG044970	`PF00249`	Myb_DNA-binding	89	135	3.5e-51	171.8
TkAUNG044970	`PF15963`	Myb_DNA-bind_7	90	133	5.3e-08	33.3
TkAUNG044970	`PF09111`	SLIDE	90	118	0.0018	19.0
TkAUNG044970	`PF23082`	Myb_DNA-binding_2	91	122	0.043	14.6
TkAUNG044970	`PF13921`	Myb_DNA-bind_6	92	152	1.2e-40	138.2
TkAUNG044970	`PF09111`	SLIDE	137	162	0.0018	19.0
TkAUNG044970	`PF15963`	Myb_DNA-bind_7	140	187	5.3e-08	33.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94FL9`	Arabidopsis thaliana	sp\|Q94FL9\|MB3R4_ARATH Transcription factor MYB3R-4	36.000%	Swiss-Prot	Medium
`Q9S7G7`	Arabidopsis thaliana	sp\|Q9S7G7\|MB3R1_ARATH Transcription factor MYB3R-1	40.100%	Swiss-Prot	Medium
`Q8H1P9`	Arabidopsis thaliana	sp\|Q8H1P9\|MB3R3_ARATH Transcription factor MYB3R-3	70.900%	Swiss-Prot	Low
`Q6R032`	Arabidopsis thaliana	sp\|Q6R032\|MB3R5_ARATH Transcription factor MYB3R-5	71.300%	Swiss-Prot	Low
`Q0JHU7`	Oryza sativa subsp. japonica	sp\|Q0JHU7\|MB3R2_ORYSJ Transcription factor MYB3R-2	70.600%	Swiss-Prot	Low

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