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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG043730
Reference: TK1151 Chr: ChrUn Coordinates: 12154996-12157570 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1797 bp · TkAUNG043730|TK1151|cDNA

ATTTGCCTTTCAATACTCATCTCAACACACACAGCCTTTTCTTTTCACTCGCACTCAAATTCCCCTCAACTCCACGGCCACCCCGAGGAGTTTGAGAAAACCCTAAAAAGCCTCCCTAAAAATCTCTCAACTTTCTCTCTAAATCTTTCAATCAATCTGCAAATCAGTTATTGGTTTCTGTTTTCAGTCATGGCAGGCGCTGCACCAGAAGGTTCTCAATTCAATGCTCAGCAATTTGACTCAAAAATGAATGAGTTGCT...

CDS

Download CDS FASTA

1431 bp · TkAUNG043730|TK1151|CDS

ATTTGCCTTTCAATACTCATCTCAACACACACAGCCTTTTCTTTTCACTCGCACTCAAATTCCCCTCAACTCCACGGCCACCCCGAGGAGTTTGAGAAAACCCTAAAAAGCCTCCCTAAAAATCTCTCAACTTTCTCTCTAAATCTTTCAATCAATCTGCAAATCAGTTATTGGTTTCTGTTTTCAGTCATGGCAGGCGCTGCACCAGAAGGTTCTCAATTCAATGCTCAGCAATTTGACTCAAAAATGAATGAGTTGCT...

Protein

Download Protein FASTA

476 aa · TkAUNG043730|TK1151|PROTEIN

ICLSILISTHTAFSFHSHSNSPQLHGHPEEFEKTLKSLPKNLSTFSLNLSINLQISYWFLFSVMAGAAPEGSQFNAQQFDSKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYNVVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRADYIKMFVLDEADEMLSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG043730
TK1151 IDTkAUNG043730
OH-1004 IDLXL04_018595
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)97.600
Protein coverage (%)TK1151 86.765 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG043730
LocationChrUn:12154996-12157570 (-)
DescriptionSimilar to Eukaryotic initiation factor 4A-15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018595 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002183 cytoplasmic translational initiation Biological Process
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003724 RNA helicase activity Molecular Function
GO:0003743 translation initiation factor activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
nta:107783884
nta:107787142
nta:107814763
nta:107821770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.497
Rank 1 · TkAUNG043730 · TK1151
Nucleus0.363
Rank 2 · TkAUNG043730 · TK1151
Mitochondrion0.089
Rank 3 · TkAUNG043730 · TK1151
Endoplasmic reticulum0.079
Rank 4 · TkAUNG043730 · TK1151
Peroxisome0.063
Rank 5 · TkAUNG043730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11075DUF278064-115 aa
PF00270DEAD128-290 aa
PF04851ResIII146-286 aa
PF07652Flavi_DEAD146-194 aa
PF13401AAA_22148-287 aa
PF26224DUF8050149-226 aa
PF00271Helicase_C172-219 aa
PF14617CMS1222-253 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG043730PF11075DUF2780641150.009916.7
TkAUNG043730PF00270DEAD1282901.1e-43149.6
TkAUNG043730PF04851ResIII1462862.8e-0731.3
TkAUNG043730PF07652Flavi_DEAD1461940.2612.0
TkAUNG043730PF13401AAA_221482870.002518.9
TkAUNG043730PF26224DUF80501492260.1312.7
TkAUNG043730PF00271Helicase_C1722192.7e-34118.4
TkAUNG043730PF14617CMS12222530.01915.1
TkAUNG043730PF00271Helicase_C2713072.7e-34118.4
TkAUNG043730PF04851ResIII2943262.8e-0731.3
TkAUNG043730PF14617CMS13053540.01915.1
TkAUNG043730PF00271Helicase_C3294372.7e-34118.4
TkAUNG043730PF00270DEAD3583991.1e-43149.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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