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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG042140
Reference: TK1151 Chr: ChrUn Coordinates: 11717617-11719325 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1480 bp · TkAUNG042140|TK1151|cDNA

CTAATTTACAATAGCGATCCTATCGGATGGTCTACTTACACAATACAAGACAACCTCAAAGGGGGTTCGTTTAACTCTAGGGTTTTCAAGTTGACACTCGATCTCCGATCCGAATTCAAATTCAACTCAAAATCCAAAATTAATCACTCCTGAATTGATTTGAAAACATGCCTCAGAGACATTCCAAGAACAACAACGATCTAGCGTTCTTCACGTATGACGAGAAGAGGAAGCTAGGTTACGGTACTCAAAAGGAGAGG...

CDS

Download CDS FASTA

915 bp · TkAUNG042140|TK1151|CDS

ATGCCTCAGAGACATTCCAAGAACAACAACGATCTAGCGTTCTTCACGTATGACGAGAAGAGGAAGCTAGGTTACGGTACTCAAAAGGAGAGGCTTGGTAAAGACTCCATCAAACCCTTCGATGCTTGCTCGCTCTGCTTGAAACCCTTCATCGATCCGTTGTGCTGTCAAAAAGGCCACGTCTTCTGTAAAGAGTGCATCCTCGAATGCTTATTGTCCCAAAAGAAAGACATCCAAAGGAAGCTGACTGCGCACACTAC...

Protein

Download Protein FASTA

304 aa · TkAUNG042140|TK1151|PROTEIN

MPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPFIDPLCCQKGHVFCKECILECLLSQKKDIQRKLTAHTTQQKQQKEDETEKLALQKARELDAFDQQNHGAVPQYTDKNLTHNQNNFHGANSVKTTSYEAEALRTMKAFWLPSATPEAPVKITAPSTTTTCPEGSEKLKMKSLFPIIFTEEPNDEKTNSPLDKTYVCPSCKVTLTNTLGLVALSSCGHVFCKKCAEKFMAVDKVCLVCNRGCK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG042140
TK1151 IDTkAUNG042140
OH-1004 IDLXL04_003131
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG042140
LocationChrUn:11717617-11719325 (+)
DescriptionSimilar to CSU1: E3 ubiquitin-protein ligase CSU1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g61620 RING-finger E3 ubiquitin-protein ligase that plays an major role in maintaining COP1 homeostasis in darkness.
The RING-Finger E3 Ubiquitin Ligase COP1 SUPPRESSOR1 Negatively Regulates COP1 Abundance in Maintaining COP1 Homeostasis in Dark-Grown Arabidopsis Seedlings.2014 · DOI: 10.1105/tpc.114.124024

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009640 photomorphogenesis Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G61620
dre:492793
mcf:102130453
xla:414557
xtr:394625
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.877
Rank 1 · TkAUNG042140 · TK1151
Cytoplasm0.188
Rank 2 · TkAUNG042140 · TK1151
Mitochondrion0.025
Rank 3 · TkAUNG042140 · TK1151
Cell membrane0.018
Rank 4 · TkAUNG042140 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkAUNG042140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15906zf-NOSIP5-75 aa
PF04641Rtf239-94 aa
PF01363FYVE41-79 aa
PF13639zf-RING_242-75 aa
PF14835zf-RING_642-73 aa
PF13445zf-RING_UBOX43-72 aa
PF14634zf-RING_543-71 aa
PF00097zf-C3HC443-75 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG042140PF15906zf-NOSIP5751.2e-1764.4
TkAUNG042140PF04641Rtf239941.2e-0732.1
TkAUNG042140PF01363FYVE41790.1113.3
TkAUNG042140PF13639zf-RING_242755.5e-0730.4
TkAUNG042140PF14835zf-RING_642730.610.7
TkAUNG042140PF13445zf-RING_UBOX43721.4e-0938.5
TkAUNG042140PF14634zf-RING_543717.8e-0729.7
TkAUNG042140PF00097zf-C3HC443756.7e-0626.6
TkAUNG042140PF13923zf-C3HC4_243740.0001722.0
TkAUNG042140PF22191IBR_143500.04514.4
TkAUNG042140PF15227zf-C3HC4_443710.6410.9
TkAUNG042140PF24921RING_XB3-XBAT3143812.49.0
TkAUNG042140PF21362Sina_RING43672.59.0
TkAUNG042140PF22191IBR_155670.04514.4
TkAUNG042140PF12678zf-rbx157730.002518.7
TkAUNG042140PF05129Zn_ribbon_Elf157700.008816.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SY88Arabidopsis thalianasp|Q9SY88|CSU1_ARATH E3 ubiquitin-protein ligase CSU173.900%Swiss-ProtHigh

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