Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1839 bp · TkAUNG027760|TK1151|cDNA
ATGGAGCAACCAGAAGGATATGTTGCCCCAGGACAAGAGTCCAAGGTTTGTAAACTTGTCAAGTCATTATATGAGTTGAAACAAGCACCCAAACAATGGCATCAAAAGTTTTATCATGTGATGATGGAATCTGGATATCAGATCAATGAATGTGACAAGTGTGTTTATGTTAAAAACACAAGTGATGGTTATGTAATCTTGTGCCTTTATGTTGATGATATGCTTATCGTTGGTAGCAATGACAAGATGATTCAATCAAC...
1839 bp · TkAUNG027760|TK1151|CDS
ATGGAGCAACCAGAAGGATATGTTGCCCCAGGACAAGAGTCCAAGGTTTGTAAACTTGTCAAGTCATTATATGAGTTGAAACAAGCACCCAAACAATGGCATCAAAAGTTTTATCATGTGATGATGGAATCTGGATATCAGATCAATGAATGTGACAAGTGTGTTTATGTTAAAAACACAAGTGATGGTTATGTAATCTTGTGCCTTTATGTTGATGATATGCTTATCGTTGGTAGCAATGACAAGATGATTCAATCAAC...
Protein
Download Protein FASTA612 aa · TkAUNG027760|TK1151|PROTEIN
MEQPEGYVAPGQESKVCKLVKSLYELKQAPKQWHQKFYHVMMESGYQINECDKCVYVKNTSDGYVILCLYVDDMLIVGSNDKMIQSTKNMLNATFDMKDWVWPTTPIDTSHHLRKNRGEGVEQVEYARIIGSLMYLMSCTRPDLVFAISRLSRYTSNPSAEHWKSITRVFEANSYIARSTMESEFIALDKSGEEAEWLRQFLEDIPRWPKPVSAISIHCDSQSAIGHALKVFSGLVNCSGGLEEPLTAVVSWETNTHIGY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG027760 |
|---|---|
| TK1151 ID | TkAUNG027760 |
| OH-1004 ID | LXL04_021875 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 94.600 |
| Protein coverage (%) | TK1151 57.353 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG027760 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:7446038-7451032 (+) | |||||||||
| Description | Protein of unknown function | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | No functional description available | |||||||||
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07727RVT_21-100 aaPF13696zf-CCHC_24-8 aaPF14223Retrotran_gag_2159-188 aaPF13696zf-CCHC_2302-306 aaPF14223Retrotran_gag_2309-402 aaPF07794DUF1633460-553 aaPF17253DUF5320470-518 aaPF13917zf-CCHC_3547-564 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG027760 | PF07727 | RVT_2 | 1 | 100 | 1.1e-25 | 91.4 |
| TkAUNG027760 | PF13696 | zf-CCHC_2 | 4 | 8 | 0.035 | 14.6 |
| TkAUNG027760 | PF14223 | Retrotran_gag_2 | 159 | 188 | 1.2e-05 | 25.8 |
| TkAUNG027760 | PF13696 | zf-CCHC_2 | 302 | 306 | 0.035 | 14.6 |
| TkAUNG027760 | PF14223 | Retrotran_gag_2 | 309 | 402 | 1.2e-05 | 25.8 |
| TkAUNG027760 | PF07794 | DUF1633 | 460 | 553 | 0.25 | 10.1 |
| TkAUNG027760 | PF17253 | DUF5320 | 470 | 518 | 0.04 | 15.8 |
| TkAUNG027760 | PF13917 | zf-CCHC_3 | 547 | 564 | 0.21 | 12.2 |
| TkAUNG027760 | PF14787 | zf-CCHC_5 | 548 | 568 | 0.026 | 15.0 |
| TkAUNG027760 | PF00098 | zf-CCHC | 549 | 564 | 1.2e-05 | 25.9 |
| TkAUNG027760 | PF13696 | zf-CCHC_2 | 549 | 565 | 0.035 | 14.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.