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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG027250
Reference: TK1151 Chr: ChrUn Coordinates: 7280995-7281930 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

936 bp · TkAUNG027250|TK1151|cDNA

ATGAATGGAACAATTGCGCCAGAGATGAAGAAGTTACCATTATTAGAACAGATTTTGTTGTCTCACAATGCTTTCACAGGTGAGACTCCGGAAGAAATTGGAGAGTGTGTTCATTTGGGGAGACTTGAATTGTCGTATAATAATTTCACTGGTGAAATACCTGAAAGCTTTGGGAAGTTAGTTAGTTTGAGGTCGCTTTACCTTAATAATATTAAGCTTTCAGGGGAGATACCTTCAAGTTTAGGTAACTGTGTTGGATT...

CDS

Download CDS FASTA

936 bp · TkAUNG027250|TK1151|CDS

ATGAATGGAACAATTGCGCCAGAGATGAAGAAGTTACCATTATTAGAACAGATTTTGTTGTCTCACAATGCTTTCACAGGTGAGACTCCGGAAGAAATTGGAGAGTGTGTTCATTTGGGGAGACTTGAATTGTCGTATAATAATTTCACTGGTGAAATACCTGAAAGCTTTGGGAAGTTAGTTAGTTTGAGGTCGCTTTACCTTAATAATATTAAGCTTTCAGGGGAGATACCTTCAAGTTTAGGTAACTGTGTTGGATT...

Protein

Download Protein FASTA

311 aa · TkAUNG027250|TK1151|PROTEIN

MNGTIAPEMKKLPLLEQILLSHNAFTGETPEEIGECVHLGRLELSYNNFTGEIPESFGKLVSLRSLYLNNIKLSGEIPSSLGNCVGLADVNLSHNRFNGHIPPGLLSDMIQNAIFFRSPGFLAVFYVGMLTSVLLAAICCVIGWRYLKRILSSNAEPETKSPPEMTQKFPRIMYKELSEATNGFDEQRLLGSGGYGRVYLGSLPDGTQIAVKVLQLETGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG027250
TK1151 IDTkAUNG027250
OH-1004 IDLXL04_029816
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.300
Protein coverage (%)TK1151 99.357 / OH-1004 83.333
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG027250
LocationChrUn:7280995-7281930 (-)
DescriptionSimilar to At2g24130: Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g24130 Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130. No verified direct reference in this release
At3g47570 Probable LRR receptor-like serine/threonine-protein kinase At3g47570. No verified direct reference in this release
At5g59270 Putative L-type lectin-domain containing receptor kinase II.2. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q1MX30 Receptor kinase that detects X.oryzae pv. oryzae protein Ax21 to promote innate immunity. No verified direct reference in this release
Os11g0569733 Receptor kinase that detects X.oryzae pv. oryzae protein Ax21 to promote innate immunity.
Cleavage and nuclear localization of the rice XA21 immune receptor.2012 · DOI: 10.1038/ncomms1932
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029816 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009617 response to bacterium Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT2G24130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.804
Rank 1 · TkAUNG027250 · TK1151
Endoplasmic reticulum0.108
Rank 2 · TkAUNG027250 · TK1151
Cytoplasm0.073
Rank 3 · TkAUNG027250 · TK1151
Nucleus0.047
Rank 4 · TkAUNG027250 · TK1151
Lysosome / Vacuole0.043
Rank 5 · TkAUNG027250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_810-24 aa
PF23286LRR_1312-55 aa
PF13855LRR_814-70 aa
PF00560LRR_115-36 aa
PF12799LRR_415-53 aa
PF13516LRR_620-28 aa
PF23598LRR_1427-89 aa
PF13516LRR_636-52 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG027250PF13855LRR_810246.2e-0936.2
TkAUNG027250PF23286LRR_1312550.00417.6
TkAUNG027250PF13855LRR_814706.2e-0936.2
TkAUNG027250PF00560LRR_115365.5e-1347.0
TkAUNG027250PF12799LRR_415534.4e-0627.5
TkAUNG027250PF13516LRR_620280.7710.7
TkAUNG027250PF23598LRR_1427890.0006119.4
TkAUNG027250PF13516LRR_636520.7710.7
TkAUNG027250PF13855LRR_838976.2e-0936.2
TkAUNG027250PF00560LRR_139605.5e-1347.0
TkAUNG027250PF00560LRR_162845.5e-1347.0
TkAUNG027250PF12799LRR_462954.4e-0627.5
TkAUNG027250PF13516LRR_662690.7710.7
TkAUNG027250PF23286LRR_13651190.00417.6
TkAUNG027250PF13855LRR_8811086.2e-0936.2
TkAUNG027250PF00560LRR_1901055.5e-1347.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUI0Arabidopsis thalianasp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g2413047.700%Swiss-ProtMedium
C0LGP4Arabidopsis thalianasp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g4757039.700%Swiss-ProtLow
Q9FIF0Arabidopsis thalianasp|Q9FIF0|LRK22_ARATH Putative L-type lectin-domain containing receptor kinase II.240.700%Swiss-ProtLow
Q1MX30Oryza sativa subsp. indicasp|Q1MX30|XA21_ORYSI Receptor kinase-like protein Xa2139.300%Swiss-ProtMedium
Q2R2D5Oryza sativa subsp. japonicasp|Q2R2D5|XA21_ORYSJ Receptor kinase-like protein Xa2138.100%Swiss-ProtMedium

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