RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG026060
Reference: TK1151 Chr: ChrUn Coordinates: 6970022-6971906 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1332 bp · TkAUNG026060|TK1151|cDNA

ATGGATAAGGGACTCAAGAGCAAGTCAAGAAGAGTGTCAAGAGAGTGCCTCATAGCTACAGCTTGGCTTGGAGTTGAGTTAGTGAAGGGCTCAGATGAAGTGAGAAATGCTGCTTGTGAGATTTTGTTACGTAGTATAGAACAGTTTGTTCATCCCGGATTCGAGCTAGAAGAACGGCTCTTGGCTTGCTTATGCATCTATAACTACACTTCTGGAAGAGGGATGAAGAACATAATTAATCTTTCAGAAGGCGTTAGAGA...

CDS

Download CDS FASTA

1332 bp · TkAUNG026060|TK1151|CDS

ATGGATAAGGGACTCAAGAGCAAGTCAAGAAGAGTGTCAAGAGAGTGCCTCATAGCTACAGCTTGGCTTGGAGTTGAGTTAGTGAAGGGCTCAGATGAAGTGAGAAATGCTGCTTGTGAGATTTTGTTACGTAGTATAGAACAGTTTGTTCATCCCGGATTCGAGCTAGAAGAACGGCTCTTGGCTTGCTTATGCATCTATAACTACACTTCTGGAAGAGGGATGAAGAACATAATTAATCTTTCAGAAGGCGTTAGAGA...

Protein

Download Protein FASTA

443 aa · TkAUNG026060|TK1151|PROTEIN

MDKGLKSKSRRVSRECLIATAWLGVELVKGSDEVRNAACEILLRSIEQFVHPGFELEERLLACLCIYNYTSGRGMKNIINLSEGVRESLRRLSNVTWMAEELLKVADYFQPNKWRISCVHSQVLEAGNKQNGGVTALIYYKGLLYSGYTDGSIKAWEIKGHIATIVHETKEHKKAVTCFALYEPGNCLLSGSSDKMIRIWQMLQRKVECIEVIPTKEAVIGLDSWGELIFATTQSHRLKVIDGTRKAKDVFKNKRVKCIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG026060
TK1151 IDTkAUNG026060
OH-1004 IDLXL04_029887
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)67.500
Protein coverage (%)TK1151 92.551 / OH-1004 33.550
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG026060
LocationChrUn:6970022-6971906 (+)
DescriptionSimilar to CERBERUS: Putative E3 ubiquitin-protein ligase LIN-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009877 nodulation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
mtr:11418360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.463
Rank 1 · TkAUNG026060 · TK1151
Nucleus0.402
Rank 2 · TkAUNG026060 · TK1151
Cell membrane0.125
Rank 3 · TkAUNG026060 · TK1151
Mitochondrion0.066
Rank 4 · TkAUNG026060 · TK1151
Endoplasmic reticulum0.064
Rank 5 · TkAUNG026060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23628ARM_LIN_C3-105 aa
PF24807WD40_CDC20-Fz91-206 aa
PF23410Beta-prop_VPS8119-208 aa
PF23869Beta-prop_WDR75_1st123-161 aa
PF29037DSE1_N128-170 aa
PF24814WD40_Prp19131-216 aa
PF00400WD40132-156 aa
PF25171Beta-prop_WDR36-Utp21_1st132-201 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG026060PF23628ARM_LIN_C31056.5e-1452.4
TkAUNG026060PF24807WD40_CDC20-Fz912061.8e-1041.3
TkAUNG026060PF23410Beta-prop_VPS81192080.01115.5
TkAUNG026060PF23869Beta-prop_WDR75_1st1231610.003217.6
TkAUNG026060PF29037DSE1_N1281700.007116.2
TkAUNG026060PF24814WD40_Prp191312161.8e-0834.5
TkAUNG026060PF00400WD401321564.3e-1040.4
TkAUNG026060PF25171Beta-prop_WDR36-Utp21_1st1322011.3e-0835.4
TkAUNG026060PF25048Beta-prop_TEP1_C1321580.0005620.6
TkAUNG026060PF25175Beta-prop_WDR51332825.1e-1039.8
TkAUNG026060PF23409Beta-prop_EML1342171e-0525.9
TkAUNG026060PF25391WD40_Gbeta1352630.00616.3
TkAUNG026060PF24805EIF3I1362030.009815.8
TkAUNG026060PF25047Beta-prop_TEP1_2nd1371813.4e-0730.4
TkAUNG026060PF23754Beta-prop_IP5PC_F1381990.00815.8
TkAUNG026060PF29630ASA11402095.3e-0523.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser