TkAUNG022990 | RubberDandelionOmics

Gene overview

TkAUNG022990

Reference: TK1151 Chr: ChrUn Coordinates: 6183496-6186487 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1074 bp · TkAUNG022990|TK1151|cDNA

ATGGAAGCTCCGATTGCCGGCGTTTCAAGGCTGGCGGAGGAAGCCAAGGAGTTGCAGGAGACGGCGTCGTCCCTGATTGCACGAACATCCCGCGAAGAAGACGCGCTTCGAAAGCGCGTGGCCTCACTCGATTCACGCATAAACTCGCTCCGTTCTTCTCTCCGCGGCTCCAAAAATTCCGACAAAGTATGCGTGTATAGGAATTGCAAGTTAGTGGAGGAGTTGGTGAGAGTGAGATATATACTGAATGAAGGAGATGC...

CDS

Download CDS FASTA

1074 bp · TkAUNG022990|TK1151|CDS

ATGGAAGCTCCGATTGCCGGCGTTTCAAGGCTGGCGGAGGAAGCCAAGGAGTTGCAGGAGACGGCGTCGTCCCTGATTGCACGAACATCCCGCGAAGAAGACGCGCTTCGAAAGCGCGTGGCCTCACTCGATTCACGCATAAACTCGCTCCGTTCTTCTCTCCGCGGCTCCAAAAATTCCGACAAAGTATGCGTGTATAGGAATTGCAAGTTAGTGGAGGAGTTGGTGAGAGTGAGATATATACTGAATGAAGGAGATGC...

Protein

Download Protein FASTA

357 aa · TkAUNG022990|TK1151|PROTEIN

MEAPIAGVSRLAEEAKELQETASSLIARTSREEDALRKRVASLDSRINSLRSSLRGSKNSDKVCVYRNCKLVEELVRVRYILNEGDAAGFLPSKAHGRFLRMFLGPINVRANRKDVQLKVKEEYNNFRDRTAYMFLCFPLLLLVLRSWIWDGCLPVLPVQLYQAWLLFLYTGLALRENILRVNGSDIRPWWIKHHYYAMAMAVISLTWEIERGPDCAQKQIGVQLFLKWAIMQGFAMILQNVYQRQRLYTRIALGKASRM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG022990`
TK1151 ID	TkAUNG022990
OH-1004 ID	LXL04_010299
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	71.900
Protein coverage (%)	TK1151 94.678 / OH-1004 58.076 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG022990`
Location	ChrUn:6183496-6186487 (-)
Description	Similar to NUDT15: Nudix hydrolase 15, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010299` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006104 succinyl-CoA metabolic process Biological Process GO:0006637 acyl-CoA metabolic process Biological Process GO:0006753 nucleoside phosphate metabolic process Biological Process GO:0009132 nucleoside diphosphate metabolic process Biological Process GO:0015937 coenzyme A biosynthetic process Biological Process GO:0015938 coenzyme A catabolic process Biological Process GO:0036114 medium-chain fatty-acyl-CoA catabolic process Biological Process GO:0044580 butyryl-CoA catabolic process Biological Process GO:0046356 acetyl-CoA catabolic process Biological Process GO:1901289 succinyl-CoA catabolic process Biological Process GO:1902858 propionyl-CoA metabolic process Biological Process GO:1902859 propionyl-CoA catabolic process Biological Process
KEGG gene cross-reference	ath:AT1G28960 ath:AT2G33980 ath:AT5G45940 hsa:283927 mmu:67528 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.592

Rank 1 · TkAUNG022990 · TK1151

Golgi apparatus0.257

Rank 2 · TkAUNG022990 · TK1151

Cell membrane0.177

Rank 3 · TkAUNG022990 · TK1151

Cytoplasm0.135

Rank 4 · TkAUNG022990 · TK1151

Nucleus0.095

Rank 5 · TkAUNG022990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09968DUF22021-69 aa

PF07851TMEM120A-B10-336 aa

PF30947PMFBP1_C10-119 aa

PF24580DUF760733-77 aa

PF28205AciT162-221 aa

PF28205AciT288-332 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG022990	`PF09968`	DUF2202	1	69	0.085	13.4
TkAUNG022990	`PF07851`	TMEM120A-B	10	336	2.4e-90	303.8
TkAUNG022990	`PF30947`	PMFBP1_C	10	119	0.11	12.0
TkAUNG022990	`PF24580`	DUF7607	33	77	0.15	12.9
TkAUNG022990	`PF28205`	AciT	162	221	5.1	8.1
TkAUNG022990	`PF28205`	AciT	288	332	5.1	8.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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