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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG020120
Reference: TK1151 Chr: ChrUn Coordinates: 5396178-5398024 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1636 bp · TkAUNG020120|TK1151|cDNA

ACTTTTAACACACTTCTAAATGGACTCATCCTAGAAGATAAAGTTCTCATAGCAGAACGATTTTTCAAGAAATTGATTAAAGAGGAGTTTTGTGACCCTAATGCAGTTATGTACAACACGATGATTAAAGGGCTTTGCAAATGTGGCATTAATGATAAAGCCATTGCCTTGCTTAGGCTAATGGATAAAAAGGGTTGTAAACCTGATGTGGTCACATATAACACCATCATTGATAGTCTTTGCAAAGATAACATGGTAGA...

CDS

Download CDS FASTA

1377 bp · TkAUNG020120|TK1151|CDS

ACTTTTAACACACTTCTAAATGGACTCATCCTAGAAGATAAAGTTCTCATAGCAGAACGATTTTTCAAGAAATTGATTAAAGAGGAGTTTTGTGACCCTAATGCAGTTATGTACAACACGATGATTAAAGGGCTTTGCAAATGTGGCATTAATGATAAAGCCATTGCCTTGCTTAGGCTAATGGATAAAAAGGGTTGTAAACCTGATGTGGTCACATATAACACCATCATTGATAGTCTTTGCAAAGATAACATGGTAGA...

Protein

Download Protein FASTA

458 aa · TkAUNG020120|TK1151|PROTEIN

TFNTLLNGLILEDKVLIAERFFKKLIKEEFCDPNAVMYNTMIKGLCKCGINDKAIALLRLMDKKGCKPDVVTYNTIIDSLCKDNMVDDALKLFKHMVLRKYIRPTVVTYNSLIRGLCNLCRWDEASKMLKEMEDEEISSNVWTFSILVDALCKEGHVEDAEGVIKLMIQSGNDPDVVTYNSLIDGYCLKGEMRKAKEVFDSMELRGLADIVTYSSLLNGYCKKLEIEEALHLFQEIIKKGLKPNVVTYSTMLQGLFLIGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG020120
TK1151 IDTkAUNG020120
OH-1004 IDLXL04_025702
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 53.493 / OH-1004 38.522
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG020120
LocationChrUn:5396178-5398024 (+)
DescriptionSimilar to At1g12700: Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025702 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G12700
ath:AT1G62930
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.649
Rank 1 · TkAUNG020120 · TK1151
Plastid0.101
Rank 2 · TkAUNG020120 · TK1151
Cytoplasm0.098
Rank 3 · TkAUNG020120 · TK1151
Nucleus0.071
Rank 4 · TkAUNG020120 · TK1151
Cell membrane0.016
Rank 5 · TkAUNG020120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-28 aa
PF12854PPR_11-24 aa
PF01535PPR1-28 aa
PF13812PPR_31-43 aa
PF14183YwpF3-29 aa
PF10363RTP1_C18-62 aa
PF29070MSC6_N17-57 aa
PF17177PPR_long27-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG020120PF13041PPR_21283.9e-133434.2
TkAUNG020120PF12854PPR_11244.4e-119388.6
TkAUNG020120PF01535PPR1281.3e-90292.2
TkAUNG020120PF13812PPR_31437.2e-63209.3
TkAUNG020120PF14183YwpF3290.008416.8
TkAUNG020120PF10363RTP1_C18620.02115.6
TkAUNG020120PF29070MSC6_N17579e-2691.6
TkAUNG020120PF17177PPR_long271111.8e-2796.8
TkAUNG020120PF12854PPR_131614.4e-119388.6
TkAUNG020120PF13041PPR_233823.9e-133434.2
TkAUNG020120PF13812PPR_333787.2e-63209.3
TkAUNG020120PF23276TPR_24331301.9e-2796.5
TkAUNG020120PF01535PPR36661.3e-90292.2
TkAUNG020120PF24760TPR_IF140_C37610.002219.1
TkAUNG020120PF10037MRP-S27401371.5e-0834.8
TkAUNG020120PF29978ATP18_TPR41803.5e-0524.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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