TkAUNG016750 | RubberDandelionOmics

Gene overview

TkAUNG016750

Reference: TK1151 Chr: ChrUn Coordinates: 4495628-4498555 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1287 bp · TkAUNG016750|TK1151|cDNA

ATGGATGGGATTTCGACAACGACCCTTCTCCCAAACACATTCTCGGGTGCTAGAGATGATTTCACTCTGCAGTTTATGATAATATGGGATCAGATCAAAGCCCCATTGATCGTCCCTATGCTTAAAATCGCAGTTTATCTCTGCTTGACAATGTCGGTGATGCTGTTGGTCGAAAAGGTTTACATGGCGGTTGTTATCACTCTGGTCAAATTCTCTGGTAGAAAGCCTGAGAAAAGATACAAATGGGAGCCATTGAAGGA...

CDS

Download CDS FASTA

1287 bp · TkAUNG016750|TK1151|CDS

ATGGATGGGATTTCGACAACGACCCTTCTCCCAAACACATTCTCGGGTGCTAGAGATGATTTCACTCTGCAGTTTATGATAATATGGGATCAGATCAAAGCCCCATTGATCGTCCCTATGCTTAAAATCGCAGTTTATCTCTGCTTGACAATGTCGGTGATGCTGTTGGTCGAAAAGGTTTACATGGCGGTTGTTATCACTCTGGTCAAATTCTCTGGTAGAAAGCCTGAGAAAAGATACAAATGGGAGCCATTGAAGGA...

Protein

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428 aa · TkAUNG016750|TK1151|PROTEIN

MDGISTTTLLPNTFSGARDDFTLQFMIIWDQIKAPLIVPMLKIAVYLCLTMSVMLLVEKVYMAVVITLVKFSGRKPEKRYKWEPLKDDLELANSGYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRIIVQVLDDSTDPFVKNMVEMECHRWASKGINIKYEIRDNRNGYKAGALKAGLKHSYVKQCDYVAIFDADFQPEPNFLWRTIPYLVHNPEIGLVQARWKFVNADECLMTRMQEMSLNYHFIVEQEVGSSTYAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG016750`
TK1151 ID	TkAUNG016750
OH-1004 ID	LXL04_012877
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	76.600
Protein coverage (%)	TK1151 93.925 / OH-1004 77.011 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG016750

Location ChrUn:4495628-4498555 (+)

Description Similar to CSLA9: Glucomannan 4-beta-mannosyltransferase 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03760`	Possesses glucomannan synthase and mannan synthase activities in vitro.	Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene.2003 · DOI: 10.1104/pp.103.030726
`At5g22740`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release
`At1g23480`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0625700`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release
`Os02g0192500`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012877 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009294 DNA-mediated transformation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010192 mucilage biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0047259 glucomannan 4-beta-mannosyltransferase activity Molecular Function

GO:0051753 mannan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G23480

ath:AT5G03760

ath:AT5G22740

dosa:Os02g0192500

dosa:Os06g0625700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.434

Rank 1 · TkAUNG016750 · TK1151

Golgi apparatus0.254

Rank 2 · TkAUNG016750 · TK1151

Cell membrane0.178

Rank 3 · TkAUNG016750 · TK1151

Cytoplasm0.126

Rank 4 · TkAUNG016750 · TK1151

Nucleus0.084

Rank 5 · TkAUNG016750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13632Glyco_trans_2_343-66 aa

PF13641Glyco_tranf_2_397-332 aa

PF00535Glycos_transf_2102-227 aa

PF13506Glyco_transf_21171-393 aa

PF13632Glyco_trans_2_3190-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG016750	`PF13632`	Glyco_trans_2_3	43	66	6.5e-19	69.2
TkAUNG016750	`PF13641`	Glyco_tranf_2_3	97	332	1.5e-14	55.0
TkAUNG016750	`PF00535`	Glycos_transf_2	102	227	2.9e-10	41.1
TkAUNG016750	`PF13506`	Glyco_transf_21	171	393	2.1e-07	30.8
TkAUNG016750	`PF13632`	Glyco_trans_2_3	190	387	6.5e-19	69.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZR3`	Arabidopsis thaliana	sp\|Q9LZR3\|CSLA9_ARATH Glucomannan 4-beta-mannosyltransferase 9	80.000%	Swiss-Prot	High
`Q9FNI7`	Arabidopsis thaliana	sp\|Q9FNI7\|CSLA2_ARATH Glucomannan 4-beta-mannosyltransferase 2	74.100%	Swiss-Prot	High
`Q9LQC9`	Arabidopsis thaliana	sp\|Q9LQC9\|CSLA3_ARATH Probable glucomannan 4-beta-mannosyltransferase 3	68.300%	Swiss-Prot	High
`Q67VS7`	Oryza sativa subsp. japonica	sp\|Q67VS7\|CSLA9_ORYSJ Probable glucomannan 4-beta-mannosyltransferase 9	73.900%	Swiss-Prot	High
`Q7PC76`	Oryza sativa subsp. japonica	sp\|Q7PC76\|CSLA1_ORYSJ Glucomannan 4-beta-mannosyltransferase 1	73.100%	Swiss-Prot	High

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