TkAUNG012190 | RubberDandelionOmics

Gene overview

TkAUNG012190

Reference: TK1151 Chr: ChrUn Coordinates: 2933190-2934824 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · TkAUNG012190|TK1151|cDNA

ATGTGGGTAAAGCCACCAGAGATCCTTGCTCGTGATAGATTGCTCGGCTCATACAAGGTTAAACCAGTCATCAAGCTGCTGAAGCAGACTCTAGTTGGAACAGGAGCACTGCTTGTTGCAGCTGCTTCATTGTTTATTTTTGCTACTCCTGTAGAGGACTTCATCAACAAAACATTTCTCCAGAAAGAGAACCCATCCAATGTTTCAGCCTCAAAGACCAGCACAAAGGAGGAGCTGCTAAGATTGCCAGTTGATGTGAA...

CDS

Download CDS FASTA

387 bp · TkAUNG012190|TK1151|CDS

ATGTGGGTAAAGCCACCAGAGATCCTTGCTCGTGATAGATTGCTCGGCTCATACAAGGTTAAACCAGTCATCAAGCTGCTGAAGCAGACTCTAGTTGGAACAGGAGCACTGCTTGTTGCAGCTGCTTCATTGTTTATTTTTGCTACTCCTGTAGAGGACTTCATCAACAAAACATTTCTCCAGAAAGAGAACCCATCCAATGTTTCAGCCTCAAAGACCAGCACAAAGGAGGAGCTGCTAAGATTGCCAGTTGATGTGAA...

Protein

Download Protein FASTA

128 aa · TkAUNG012190|TK1151|PROTEIN

MWVKPPEILARDRLLGSYKVKPVIKLLKQTLVGTGALLVAAASLFIFATPVEDFINKTFLQKENPSNVSASKTSTKEELLRLPVDVKSDDDLAAAAAEAADGRPVYCRDRYYRALAGGQYCKWEDLVK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG012190`
TK1151 ID	TkAUNG012190
OH-1004 ID	LXL04_024377
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	82.700
Protein coverage (%)	TK1151 99.219 / OH-1004 40.193 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG012190

Location ChrUn:2933190-2934824 (+)

Description Similar to CGLD27: Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67370`	Required for growth in low iron conditions.	Systems and trans-system level analysis identifies conserved iron deficiency responses in the plant lineage.2012 · DOI: 10.1105/tpc.112.102491

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_024377 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:1990641 response to iron ion starvation Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G67370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.275

Rank 1 · TkAUNG012190 · TK1151

Extracellular0.185

Rank 2 · TkAUNG012190 · TK1151

Cytoplasm0.153

Rank 3 · TkAUNG012190 · TK1151

Golgi apparatus0.153

Rank 4 · TkAUNG012190 · TK1151

Mitochondrion0.105

Rank 5 · TkAUNG012190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06799CGLD27-like1-32 aa

PF23477zf_Tbcl_2101-111 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG012190	`PF06799`	CGLD27-like	1	32	4.8e-08	33.9
TkAUNG012190	`PF23477`	zf_Tbcl_2	101	111	0.26	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN15`	Arabidopsis thaliana	sp\|Q9FN15\|GLD27_ARATH Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic	78.900%	Swiss-Prot	High

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