TkAUNG009000 | RubberDandelionOmics

Gene overview

TkAUNG009000

Reference: TK1151 Chr: ChrUn Coordinates: 2268559-2273508 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2412 bp · TkAUNG009000|TK1151|cDNA

AGTTTGCCGGAATTCCTCCTCCGCAACCTGACGTTCGGCGGCTTTGACCTTTTTCTGGGCGGCTTTAGCAGCTCTACGCTCTTCACTTTCAATCCTCAAAGCTTCCTTCTTGATTTCATCTTTCCTCTGTTTCTCGAGCCTCTGAAGCTCCATTTCATGGATGTATTCCTTGCGAACTACTTTAACCTTTTTCGCATAGTCACGACGGAGCTGATCGAGCTTCGCTTGAGCCTCCTTGGGATCCTTCGGTGGTTTCCAGC...

CDS

Download CDS FASTA

1509 bp · TkAUNG009000|TK1151|CDS

ATGAGGAGGCTTGGAGAAGGAACGACATTCAAAAGACTGCATCATAACCGACACCAGCTGAAGCAAGTTAAGGGACTATTCGGCACACTTGCAATTGCAGCTATCTTACTCATTGCTCCGACTCTCTACTACTTCTACTTCTACACCACTACTTCATCATCATCATCATCATCATCATCCTCGGACTTCCCATCTGAGATTAATGTGGAGAAACTCTGGGATGCTGCTGATTCCGATGGCTGGATACCATCATCTGTTCC...

Protein

Download Protein FASTA

502 aa · TkAUNG009000|TK1151|PROTEIN

MRRLGEGTTFKRLHHNRHQLKQVKGLFGTLAIAAILLIAPTLYYFYFYTTTSSSSSSSSSSDFPSEINVEKLWDAADSDGWIPSSVPRSDWPPPPSESNGYLRVRCNGGLNQQRTAICNVVLAARIMNATLVLPELDANAYWHDDSGFEGIYDVDHFINSLKHDVRIVKSIPEIKKNGKTKKIKASQLRPPRDAPIHWYTTVALERMKEHGAIYLTPFSHRLAEEINNPEYQRLRCRVNYHALIFKPHIMELSNKIVDKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG009000`
TK1151 ID	TkAUNG009000
OH-1004 ID	LXL04_014567
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	98.400
Protein coverage (%)	TK1151 99.602 / OH-1004 89.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG009000

Location ChrUn:2268559-2273508 (+)

Description Similar to OFUT1: O-fucosyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04910`	O-fucosyltransferase 1.	No verified direct reference in this release
`At5g35570`	O-fucosyltransferase 35.	No verified direct reference in this release
`At2g03280`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I (By similarity).	No verified direct reference in this release
`At5g15740`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I.	Pectin RG-I rhamnosyltransferases represent a novel plant-specific glycosyltransferase family.2018 · DOI: 10.1038/s41477-018-0217-7
`At5g64600`	O-fucosyltransferase 38.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014567 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0010214 seed coat development Biological Process

GO:0010395 rhamnogalacturonan I metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G04910

ath:AT1G14020

ath:AT2G03280

ath:AT4G24530

ath:AT5G15740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.819

Rank 1 · TkAUNG009000 · TK1151

Endoplasmic reticulum0.068

Rank 2 · TkAUNG009000 · TK1151

Cell membrane0.062

Rank 3 · TkAUNG009000 · TK1151

Cytoplasm0.042

Rank 4 · TkAUNG009000 · TK1151

Extracellular0.040

Rank 5 · TkAUNG009000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250O-FucT101-420 aa

PF14771DUF4476291-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG009000	`PF10250`	O-FucT	101	420	2e-92	311.2
TkAUNG009000	`PF14771`	DUF4476	291	338	0.2	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W486`	Arabidopsis thaliana	sp\|Q8W486\|OFUT1_ARATH O-fucosyltransferase 1	73.400%	Swiss-Prot	High
`Q94BY4`	Arabidopsis thaliana	sp\|Q94BY4\|OFT35_ARATH O-fucosyltransferase 35	38.500%	Swiss-Prot	Medium
`Q6E279`	Arabidopsis thaliana	sp\|Q6E279\|RRT3_ARATH Rhamnogalacturonan I rhamnosyltransferase 4	39.600%	Swiss-Prot	Medium
`Q4V398`	Arabidopsis thaliana	sp\|Q4V398\|RRT1_ARATH Rhamnogalacturonan I rhamnosyltransferase 1	38.800%	Swiss-Prot	Medium
`F4KF16`	Arabidopsis thaliana	sp\|F4KF16\|OFT38_ARATH O-fucosyltransferase 38	38.200%	Swiss-Prot	Medium

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