Gene Card
Gene overview
cDNA / CDS / Protein Sequences
549 bp · TkAUNG005660|TK1151|cDNA
ATGAATCGGAGGCTGAACCTTGATATACCCCAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCCGCGGATCGTTTGATCCGAATCAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGCAAAATAAACGTATTCGTTCTGTAGCAGATCTTTTACAAGAGCAATTTGGATTGGCCTTGGTTCGTTTAGAAAATATGGCTCGAGGAAACATATATGCAGCACTTAAGCATAACTGGACACCAACTCC...
549 bp · TkAUNG005660|TK1151|CDS
ATGAATCGGAGGCTGAACCTTGATATACCCCAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCCGCGGATCGTTTGATCCGAATCAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGCAAAATAAACGTATTCGTTCTGTAGCAGATCTTTTACAAGAGCAATTTGGATTGGCCTTGGTTCGTTTAGAAAATATGGCTCGAGGAAACATATATGCAGCACTTAAGCATAACTGGACACCAACTCC...
Protein
Download Protein FASTA183 aa · TkAUNG005660|TK1151|PROTEIN
MNRRLNLDIPQNNTFLLPRDILAAADRLIRIKFGMGTLDDMNHLQNKRIRSVADLLQEQFGLALVRLENMARGNIYAALKHNWTPTPQNLVNSTPLTDTYKVFFRLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTARTATFPIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGRWG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG005660 |
|---|---|
| TK1151 ID | TkAUNG005660 |
| OH-1004 ID | LXL04_027241 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 26.500 |
| Protein coverage (%) | TK1151 83.607 / OH-1004 12.963Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG005660 |
|---|---|
| Location | ChrUn:1617412-1617960 (+) |
| Description | Similar to RPB2: DNA-directed RNA polymerase II subunit RPB2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006354 DNA-templated transcription elongation Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process GO:0035196 miRNA processing Biological Process GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005665 RNA polymerase II, core complex Cellular Component GO:0009506 plasmodesma Cellular Component GO:0016020 membrane Cellular Component |
| KEGG gene cross-reference | ath:AT4G21710 bta:538184 ddi:DDB_G0288257 hsa:5431 sly:544278 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04561RNA_pol_Rpb2_21-50 aaPF22774DNAJC11_beta-barrel68-142 aaPF04565RNA_pol_Rpb2_3111-179 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG005660 | PF04561 | RNA_pol_Rpb2_2 | 1 | 50 | 1.4e-13 | 51.7 |
| TkAUNG005660 | PF22774 | DNAJC11_beta-barrel | 68 | 142 | 0.15 | 12.2 |
| TkAUNG005660 | PF04565 | RNA_pol_Rpb2_3 | 111 | 179 | 8.4e-26 | 90.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.