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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG002620
Reference: TK1151 Chr: ChrUn Coordinates: 833598-836824 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2704 bp · TkAUNG002620|TK1151|cDNA

TTTCACTATAATAAACGACGACGTACAGTGTCAACGGTAACTTAGTTGGGAATTGGGAGCAATTTAAAATAAGGTATGATTCTGTTACAACGGCTACCTGCAACAACATTTCCTCCCCAAATCCTTCCACTCATACAAGTAATTTTTCCTAAAATTCTTCAATAAACCGATCACATTCAACAATCTCTCGATTCTCGTTCTGTTGATGGGTTAATCTTGACTCCGAACACCAGGTTATAACAAACAGTGAAAACATGACC...

CDS

Download CDS FASTA

2190 bp · TkAUNG002620|TK1151|CDS

ATGACCGAAAAAGTTTATGAAGAGCTACACAATGCAAAAGCAGAAATCGAAAAGCTGAGATCAGAATACCATGAAAAATCCAGTCTCTGTAACAACTTGAAAAGATCACATGATGATCAAGTCAAAAAAATCCAAGAACTCAATCTAAAACTCGAAAAACAGCATCAAGAAACAGAATTAAAGACTGATGAAATCTATGCTGCAAATCAGTCACTCAAAGATCTTGAATGTAAACTTAAAGAAAAGGAGAATATCATAAA...

Protein

Download Protein FASTA

729 aa · TkAUNG002620|TK1151|PROTEIN

MTEKVYEELHNAKAEIEKLRSEYHEKSSLCNNLKRSHDDQVKKIQELNLKLEKQHQETELKTDEIYAANQSLKDLECKLKEKENIIKSFTSMNDKLRVDFNSKLQESEEEKTNILCLLDEANMKIQELEQKNRDFMDKIEVLKEGIVSVSQKKCASESKVAKASKQMRERGDLFEKLEEEKVNLEEQIKWKNEQFKHLEEAHEKIRNKLRIKEKEWDMEKSSFFDEISTLETKLDSQITLSEDLKRRLEISNQDLAHEQN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG002620
TK1151 IDTkAUNG002620
OH-1004 IDLXL04_014008
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 97.330
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG002620
LocationChrUn:833598-836824 (-)
DescriptionSimilar to At4g38062: Uncharacterized protein At4g38062
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38062 Uncharacterized protein At4g38062. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014008 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT4G38062
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.616
Rank 1 · TkAUNG002620 · TK1151
Nucleus0.312
Rank 2 · TkAUNG002620 · TK1151
Cell membrane0.091
Rank 3 · TkAUNG002620 · TK1151
Golgi apparatus0.045
Rank 4 · TkAUNG002620 · TK1151
Endoplasmic reticulum0.040
Rank 5 · TkAUNG002620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30966At4g38062_C14-253 aa
PF30964At4g38062_N15-263 aa
PF30966At4g38062_C105-340 aa
PF30966At4g38062_C256-478 aa
PF30964At4g38062_N260-351 aa
PF13784Fic_N262-304 aa
PF17743DUF5580270-299 aa
PF28237Asr1405_Asl0597281-325 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG002620PF30966At4g38062_C142533.1e-29102.9
TkAUNG002620PF30964At4g38062_N152637.7e-108361.6
TkAUNG002620PF30966At4g38062_C1053403.1e-29102.9
TkAUNG002620PF30966At4g38062_C2564783.1e-29102.9
TkAUNG002620PF30964At4g38062_N2603517.7e-108361.6
TkAUNG002620PF13784Fic_N2623043.48.5
TkAUNG002620PF17743DUF55802702990.05914.1
TkAUNG002620PF28237Asr1405_Asl05972813250.08213.7
TkAUNG002620PF30565DUF86322963560.1213.1
TkAUNG002620PF30964At4g38062_N3574537.7e-108361.6
TkAUNG002620PF13784Fic_N3654093.48.5
TkAUNG002620PF17743DUF55803764040.05914.1
TkAUNG002620PF28237Asr1405_Asl05973934070.08213.7
TkAUNG002620PF30565DUF86324014570.1213.1
TkAUNG002620PF13784Fic_N4064243.48.5
TkAUNG002620PF30964At4g38062_N4785917.7e-108361.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0CB23Arabidopsis thalianasp|P0CB23|Y4862_ARATH Uncharacterized protein At4g3806235.200%Swiss-ProtMedium

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