TkAUNG002560 | RubberDandelionOmics

Gene overview

TkAUNG002560

Reference: TK1151 Chr: ChrUn Coordinates: 809560-812407 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

609 bp · TkAUNG002560|TK1151|cDNA

ATGGCAAAGGAAGTGAAATCAGGAGACGATACGCTGTTTTGGCTGAATAAATGGCATGGAGCGGTAGCATTTAAAGAAGCATTTCCAGATCTGTTTCAGTTAGAAAGACACAAGCATTGCAAAGTGAAGGACAGAGTGGAAGCCGGAGGTGTCAACTGGAGCTGGAAATTGGCACCAACAGCAGACCCGCATTCGGATGATGGCGAGTACTATGTACACAAGATCAGACATATGCTTGATGACCCACATGAAGAAACACA...

CDS

Download CDS FASTA

609 bp · TkAUNG002560|TK1151|CDS

ATGGCAAAGGAAGTGAAATCAGGAGACGATACGCTGTTTTGGCTGAATAAATGGCATGGAGCGGTAGCATTTAAAGAAGCATTTCCAGATCTGTTTCAGTTAGAAAGACACAAGCATTGCAAAGTGAAGGACAGAGTGGAAGCCGGAGGTGTCAACTGGAGCTGGAAATTGGCACCAACAGCAGACCCGCATTCGGATGATGGCGAGTACTATGTACACAAGATCAGACATATGCTTGATGACCCACATGAAGAAACACA...

Protein

Download Protein FASTA

202 aa · TkAUNG002560|TK1151|PROTEIN

MAKEVKSGDDTLFWLNKWHGAVAFKEAFPDLFQLERHKHCKVKDRVEAGGVNWSWKLAPTADPHSDDGEYYVHKIRHMLDDPHEETHPGEVIKWTRDVPIKVMCFVWRANQDCILTVTQLQKRGVPLQETRCGYCTEEGENAVHVLWQCSFAATVWYWFFKWCDIPIPTIQTVEELIAFVIQWGQSEKRRRDLISITYGTLC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG002560`
TK1151 ID	TkAUNG002560
OH-1004 ID	LXL04_016670
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	45.400
Protein coverage (%)	TK1151 99.505 / OH-1004 11.345 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG002560`
Location	ChrUn:809560-812407 (-)
Description	Similar to RHM1: Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016670` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009225 nucleotide-sugar metabolic process Biological Process GO:0010192 mucilage biosynthetic process Biological Process GO:0010214 seed coat development Biological Process GO:0010253 UDP-rhamnose biosynthetic process Biological Process GO:0010315 auxin export across the plasma membrane Biological Process GO:0019300 rhamnose biosynthetic process Biological Process GO:0019305 dTDP-rhamnose biosynthetic process Biological Process GO:0030154 cell differentiation Biological Process GO:0042127 regulation of cell population proliferation Biological Process GO:0051555 flavonol biosynthetic process Biological Process GO:0071555 cell wall organization Biological Process GO:0005634 nucleus Cellular Component
KEGG gene cross-reference	ath:AT1G53500 ath:AT1G63000 ath:AT1G78570 ath:AT3G14790 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.479

Rank 1 · TkAUNG002560 · TK1151

Cell membrane0.372

Rank 2 · TkAUNG002560 · TK1151

Nucleus0.233

Rank 3 · TkAUNG002560 · TK1151

Golgi apparatus0.063

Rank 4 · TkAUNG002560 · TK1151

Endoplasmic reticulum0.058

Rank 5 · TkAUNG002560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT18-50 aa

PF11249DUF304746-111 aa

PF13966zf-RVT79-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG002560	`PF13966`	zf-RVT	18	50	5.6e-15	56.5
TkAUNG002560	`PF11249`	DUF3047	46	111	0.14	12.4
TkAUNG002560	`PF13966`	zf-RVT	79	156	5.6e-15	56.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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