TkAUNG001100 | RubberDandelionOmics

Gene overview

TkAUNG001100

Reference: TK1151 Chr: ChrUn Coordinates: 280231-280954 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

615 bp · TkAUNG001100|TK1151|cDNA

TTTCAGCCAGATGTAACAGCACCGGGGGTGAATGTTCTTGCAGCATGGTCTCCATTGGCTACTGAAAACACTGCTGGAAGATCAATTGACTATAACATAATCTCAGGCACTTCAATGTCATGCCCACATGTTTCGGCACTTGCTGCCATAGTGAAATCATTCCATCCTTCATGGAGCCCAGCAGCCATCAAGTCTGCTATAATGACAACAGCTTCATTACAAGACATCCAAATGGCACTCAAACCTCACCTTTTGATTAT...

CDS

Download CDS FASTA

615 bp · TkAUNG001100|TK1151|CDS

TTTCAGCCAGATGTAACAGCACCGGGGGTGAATGTTCTTGCAGCATGGTCTCCATTGGCTACTGAAAACACTGCTGGAAGATCAATTGACTATAACATAATCTCAGGCACTTCAATGTCATGCCCACATGTTTCGGCACTTGCTGCCATAGTGAAATCATTCCATCCTTCATGGAGCCCAGCAGCCATCAAGTCTGCTATAATGACAACAGCTTCATTACAAGACATCCAAATGGCACTCAAACCTCACCTTTTGATTAT...

Protein

Download Protein FASTA

204 aa · TkAUNG001100|TK1151|PROTEIN

FQPDVTAPGVNVLAAWSPLATENTAGRSIDYNIISGTSMSCPHVSALAAIVKSFHPSWSPAAIKSAIMTTASLQDIQMALKPHLLIMDPAYHPAAAIDPGLIYDFDTEDIIDFLCSTGASSAQLKNLTGEITYCRNTSKSSYDFNYPSIGVSNLRGNISVHRTVTYYGEGPAVYKAEVDYPAGIYVSVTPNELSFEESGIRCLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG001100`
TK1151 ID	TkAUNG001100
OH-1004 ID	LXL04_032946
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	59.400
Protein coverage (%)	TK1151 93.627 / OH-1004 26.121 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG001100

Location ChrUn:280231-280954 (-)

Description Similar to SbtS: Subtilisin-like serine-protease S

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10520`	Subtilisin-like protease SBT3.9.	No verified direct reference in this release
`At4g10530`	Subtilisin-like protease SBT3.10.	No verified direct reference in this release
`At2g04160`	Serine protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032946 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009733 response to auxin Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0010037 response to carbon dioxide Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0010214 seed coat development Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:2000038 regulation of stomatal complex development Biological Process

KEGG gene cross-reference

ath:AT1G20160

ath:AT2G04160

ath:AT4G34980

ath:AT5G67360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.768

Rank 1 · TkAUNG001100 · TK1151

Lysosome / Vacuole0.066

Rank 2 · TkAUNG001100 · TK1151

Cytoplasm0.061

Rank 3 · TkAUNG001100 · TK1151

Cell membrane0.056

Rank 4 · TkAUNG001100 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkAUNG001100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00082Peptidase_S82-72 aa

PF17766fn3_6143-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG001100	`PF00082`	Peptidase_S8	2	72	1.7e-15	57.8
TkAUNG001100	`PF17766`	fn3_6	143	199	1.2e-14	55.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSB0`	Arabidopsis thaliana	sp\|Q9ZSB0\|SBT39_ARATH Subtilisin-like protease SBT3.9	43.200%	Swiss-Prot	Medium
`Q9ZSB1`	Arabidopsis thaliana	sp\|Q9ZSB1\|SBT3A_ARATH Subtilisin-like protease SBT3.10	42.300%	Swiss-Prot	Medium
`Q9ZSP5`	Arabidopsis thaliana	sp\|Q9ZSP5\|AIR3_ARATH Subtilisin-like protease SBT5.3	41.700%	Swiss-Prot	Medium

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