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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G435330
Reference: TK1151 Chr: Chr08 Coordinates: 110664709-110667674 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2856 bp · TkA08G435330|TK1151|cDNA

CATCACTACTGCTATCTAGGGTTTCGAGTTCAACCGGAAGAACCTCCCTAAAACCCCCCCAAATCTAATCTTTTTAACTCTATATCGTTCATATTAAATCAAGAAGATTCAGTTTCGAGCAAAACGATCTCATTCGCTTCTATCGGCTCTAAAAGGAGTTTACTTTATCAAAAGCTAGAATAAATATCTCTGTTTTAGTTAGAAAACATGGGGAAATCTGGAGGGAGGAAGAAGAAGGGTGGCGCTGTCAATCAAAATCA...

CDS

Download CDS FASTA

2289 bp · TkA08G435330|TK1151|CDS

ATGGGGAAATCTGGAGGGAGGAAGAAGAAGGGTGGCGCTGTCAATCAAAATCAAAACCCTAGTCAAACCGAGAGTCAAGTATCGGCAGTTAACACCAAACCGTCATCAATGATGCCCAACGGCGGTGTTGGTATAGATTTGGATCCAACTATTTTCTTAAAGAGGGCTCACGAGCTTAAAGAAGAAGGCAACAATAGGTTCCAAGCTAGAGATTTCGTGGGTGCACTTGAACAATACGAGAATGCTCTCAAACTGACCCC...

Protein

Download Protein FASTA

762 aa · TkA08G435330|TK1151|PROTEIN

MGKSGGRKKKGGAVNQNQNPSQTESQVSAVNTKPSSMMPNGGVGIDLDPTIFLKRAHELKEEGNNRFQARDFVGALEQYENALKLTPKTHPDRAVYHSNKAACLMQMKPIDYKAVISECSMALQVQPRYVRALLRRARAFEAVGKYEMALLDVQTLLGAEPNHRDALEIARRLRGPIIGARHEAQQDLHSRPSPAALGASAIRGAPIAGLGPCLPARPVPKKTGTPSVPVNVPNNKTYPVPPIEIDPEVKSTQMPKLVLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G435330
TK1151 IDTkA08G435330
OH-1004 IDLXL04_034769
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 95.932 / OH-1004 98.518
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G435330
LocationChr08:110664709-110667674 (+)
DescriptionSimilar to CLMP1: Protein CLMP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g62390 Required for plastid separation and partitioning during cell division.
CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis.2011 · DOI: 10.1073/pnas.1106706108
At2g25290 Carboxylate clamp type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone.
Myosin-driven transport network in plants.2017 · DOI: 10.1073/pnas.1620577114
At4g32070 Carboxylate clamp-type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone. No verified direct reference in this release
At5g20360 Carboxylate clamp type tetratricopeptide repeat protein that may act as a potential Hsp90/Hsp70 co-chaperone. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034769 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0030659 cytoplasmic vesicle membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0080115 myosin XI tail binding Molecular Function
KEGG gene cross-reference
ath:AT1G62390
ath:AT2G25290
ath:AT4G32070
ath:AT5G20360
zma:103641203
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.565
Rank 1 · TkA08G435330 · TK1151
Nucleus0.353
Rank 2 · TkA08G435330 · TK1151
Cell membrane0.126
Rank 3 · TkA08G435330 · TK1151
Golgi apparatus0.091
Rank 4 · TkA08G435330 · TK1151
Endoplasmic reticulum0.069
Rank 5 · TkA08G435330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13371TPR_955-93 aa
PF07719TPR_259-88 aa
PF10952DUF275361-90 aa
PF13432TPR_1662-99 aa
PF13414TPR_1166-88 aa
PF00515TPR_166-87 aa
PF13424TPR_1266-104 aa
PF13428TPR_1467-89 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G435330PF13371TPR_955933.7e-0524.4
TkA08G435330PF07719TPR_259883.7e-0524.2
TkA08G435330PF10952DUF275361900.06614.1
TkA08G435330PF13432TPR_1662990.05114.8
TkA08G435330PF13414TPR_1166881.5e-0834.9
TkA08G435330PF00515TPR_166870.0004720.6
TkA08G435330PF13424TPR_12661040.1413.1
TkA08G435330PF13428TPR_1467890.05914.8
TkA08G435330PF14559TPR_19671080.07914.0
TkA08G435330PF13181TPR_875880.1313.2
TkA08G435330PF30484ETO1_C761730.0004920.1
TkA08G435330PF13431TPR_1779880.002818.5
TkA08G435330PF07719TPR_2951073.7e-0524.2
TkA08G435330PF00515TPR_1961080.0004720.6
TkA08G435330PF13371TPR_91111743.7e-0524.4
TkA08G435330PF14559TPR_191121650.07914.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48802Arabidopsis thalianasp|O48802|PHOX2_ARATH Protein CLMP163.200%Swiss-ProtHigh
F4IRM4Arabidopsis thalianasp|F4IRM4|PHOX1_ARATH Protein PHOX138.400%Swiss-ProtMedium
F4JTI1Arabidopsis thalianasp|F4JTI1|PHOX4_ARATH Protein PHOX435.400%Swiss-ProtMedium
F4K487Arabidopsis thalianasp|F4K487|PHOX3_ARATH Protein PHOX332.500%Swiss-ProtMedium

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