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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G431920
Reference: TK1151 Chr: Chr08 Coordinates: 109809535-109811061 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1191 bp · TkA08G431920|TK1151|cDNA

ATGGGACTCATGGCGATGCTCCCTCATTCTCCCGCGAAAACCATCAAGCAAAAAGTCTTGTCCCTCATTCACGACTCAAAAGAACTCCATATCATCTTCCAAATCCATGCATTCCTTCTAAAAACTTCCCTACAATCGAACAATTTCATCGTCACCAAGCTGCTTCGTAATTTCTCTTTGAATTCCTCAAACAATTTGCGTTATGCCAGATCCTTTTTCGACGAAATGCCAAGTCCAGACACATTTCTCTGGAACACCAT...

CDS

Download CDS FASTA

1191 bp · TkA08G431920|TK1151|CDS

ATGGGACTCATGGCGATGCTCCCTCATTCTCCCGCGAAAACCATCAAGCAAAAAGTCTTGTCCCTCATTCACGACTCAAAAGAACTCCATATCATCTTCCAAATCCATGCATTCCTTCTAAAAACTTCCCTACAATCGAACAATTTCATCGTCACCAAGCTGCTTCGTAATTTCTCTTTGAATTCCTCAAACAATTTGCGTTATGCCAGATCCTTTTTCGACGAAATGCCAAGTCCAGACACATTTCTCTGGAACACCAT...

Protein

Download Protein FASTA

396 aa · TkA08G431920|TK1151|PROTEIN

MGLMAMLPHSPAKTIKQKVLSLIHDSKELHIIFQIHAFLLKTSLQSNNFIVTKLLRNFSLNSSNNLRYARSFFDEMPSPDTFLWNTMIRAYLHSQNHDECLSLFLQLRRQDRLFIDSFSLSLVVQACGRSGFLQNGQTIHAQSQEALNLFHKMQLSKFLPDKITIVSTAVHKYIIQNQIKIDIKLATSLVNMYAKCGDIDTASNIFHNIKKKDVFLWSAMIIGLANHGYGELAIDHFNNMISEGIKPNGITFIGVLSACS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G431920
TK1151 IDTkA08G431920
OH-1004 IDLXL04_034743
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)76.000
Protein coverage (%)TK1151 98.990 / OH-1004 97.864
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G431920
LocationChr08:109809535-109811061 (+)
DescriptionSimilar to PCMP-H61: Pentatricopeptide repeat-containing protein At5g66520
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At1g17630 Putative pentatricopeptide repeat-containing protein At1g17630. No verified direct reference in this release
At5g40405 Putative pentatricopeptide repeat-containing protein At5g40405. No verified direct reference in this release
At1g74400 Putative pentatricopeptide repeat-containing protein At1g74400. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034743 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G74630
ath:AT4G18840
ath:AT5G40405
ath:AT5G48910
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.652
Rank 1 · TkA08G431920 · TK1151
Plastid0.155
Rank 2 · TkA08G431920 · TK1151
Nucleus0.050
Rank 3 · TkA08G431920 · TK1151
Cytoplasm0.035
Rank 4 · TkA08G431920 · TK1151
Cell membrane0.005
Rank 5 · TkA08G431920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N62-96 aa
PF01535PPR63-77 aa
PF13041PPR_263-77 aa
PF12854PPR_164-76 aa
PF22330Rib_mS39_PPR66-89 aa
PF12854PPR_178-91 aa
PF13041PPR_279-127 aa
PF13812PPR_380-105 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G431920PF29070MSC6_N62964e-0833.5
TkA08G431920PF01535PPR63772.1e-30103.5
TkA08G431920PF13041PPR_263779.3e-29100.0
TkA08G431920PF12854PPR_164764.9e-1142.9
TkA08G431920PF22330Rib_mS39_PPR66890.1812.3
TkA08G431920PF12854PPR_178914.9e-1142.9
TkA08G431920PF13041PPR_2791279.3e-29100.0
TkA08G431920PF13812PPR_3801057.7e-0833.0
TkA08G431920PF01535PPR831092.1e-30103.5
TkA08G431920PF13428TPR_14831110.006317.8
TkA08G431920PF13424TPR_12841110.06414.2
TkA08G431920PF23276TPR_24861100.0001822.2
TkA08G431920PF14559TPR_19861120.006517.5
TkA08G431920PF01535PPR1211342.1e-30103.5
TkA08G431920PF30813Rhs1CTD1241820.01916.1
TkA08G431920PF13041PPR_21421649.3e-29100.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial34.700%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic34.400%Swiss-ProtMedium
Q9LNP2Arabidopsis thalianasp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g1763035.800%Swiss-ProtMedium
Q9FND7Arabidopsis thalianasp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g4040540.000%Swiss-ProtMedium
Q9CA73Arabidopsis thalianasp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing protein At1g7440035.500%Swiss-ProtMedium

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