TkA08G420460 | RubberDandelionOmics

Gene overview

TkA08G420460

Reference: TK1151 Chr: Chr08 Coordinates: 106877362-106878121 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · TkA08G420460|TK1151|cDNA

ATGAATCCAAAAATTTCAGATTTTGGCATGGCCAGAATTTTCGGCAGAAATCAAATAGAAGGAAAGACAAACAGAATTGTTGGAACTTTTGGATACATGTCACCAGAGTATGCAATGCATGGCAACTTCTCTGTGAAGTCAGATGTGTTCAGTTTTGGTGTACTGGTTCTTGAGATTATTAGCGGATTGAGAAACATCAGGGTTACTGAATGTGGTCATATGGACCTTTTATGTCATGCTTGGGATAAATGGAAGAATGG...

CDS

Download CDS FASTA

567 bp · TkA08G420460|TK1151|CDS

ATGAATCCAAAAATTTCAGATTTTGGCATGGCCAGAATTTTCGGCAGAAATCAAATAGAAGGAAAGACAAACAGAATTGTTGGAACTTTTGGATACATGTCACCAGAGTATGCAATGCATGGCAACTTCTCTGTGAAGTCAGATGTGTTCAGTTTTGGTGTACTGGTTCTTGAGATTATTAGCGGATTGAGAAACATCAGGGTTACTGAATGTGGTCATATGGACCTTTTATGTCATGCTTGGGATAAATGGAAGAATGG...

Protein

Download Protein FASTA

188 aa · TkA08G420460|TK1151|PROTEIN

MNPKISDFGMARIFGRNQIEGKTNRIVGTFGYMSPEYAMHGNFSVKSDVFSFGVLVLEIISGLRNIRVTECGHMDLLCHAWDKWKNGEPLNILDSNLVENCSKNEVIRCINIALLSVQEDAELRPSMASIVSMLNSYSVTLPLPQSPPFVSHSRARRMTSTSLEPNSSISTSTVWETDASLITEVHAR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G420460`
TK1151 ID	TkA08G420460
OH-1004 ID	LXL04_034669
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 26.934 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G420460

Location Chr08:106877362-106878121 (-)

Description Similar to CRK25: Cysteine-rich receptor-like protein kinase 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23180`	Cysteine-rich receptor-like protein kinase 10.	No verified direct reference in this release
`At4g23230`	Cysteine-rich receptor-like protein kinase 15.	No verified direct reference in this release
`At4g23140`	Cysteine-rich receptor-like protein kinase 6.	No verified direct reference in this release
`At4g23160`	Cysteine-rich receptor-like protein kinase 8.	No verified direct reference in this release
`At4g11490`	Putative cysteine-rich receptor-like protein kinase 33.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034669 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0012501 programmed cell death Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G05200

ath:AT4G23130

ath:AT4G23180

ath:AT4G23230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511

Rank 1 · TkA08G420460 · TK1151

Cell membrane0.397

Rank 2 · TkA08G420460 · TK1151

Nucleus0.276

Rank 3 · TkA08G420460 · TK1151

Golgi apparatus0.040

Rank 4 · TkA08G420460 · TK1151

Endoplasmic reticulum0.033

Rank 5 · TkA08G420460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase3-67 aa

PF07714PK_Tyr_Ser-Thr4-134 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G420460	`PF00069`	Pkinase	3	67	2.4e-11	44.3
TkA08G420460	`PF07714`	PK_Tyr_Ser-Thr	4	134	4.1e-14	53.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYA4`	Arabidopsis thaliana	sp\|Q8GYA4\|CRK10_ARATH Cysteine-rich receptor-like protein kinase 10	52.900%	Swiss-Prot	High
`Q8W4G6`	Arabidopsis thaliana	sp\|Q8W4G6\|CRK15_ARATH Cysteine-rich receptor-like protein kinase 15	59.300%	Swiss-Prot	High
`Q9C5S9`	Arabidopsis thaliana	sp\|Q9C5S9\|CRK6_ARATH Cysteine-rich receptor-like protein kinase 6	57.700%	Swiss-Prot	High
`O65468`	Arabidopsis thaliana	sp\|O65468\|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8	50.300%	Swiss-Prot	High
`Q9LDN1`	Arabidopsis thaliana	sp\|Q9LDN1\|CRK33_ARATH Putative cysteine-rich receptor-like protein kinase 33	59.100%	Swiss-Prot	High

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