TkA08G402220 | RubberDandelionOmics

Gene overview

TkA08G402220

Reference: TK1151 Chr: Chr08 Coordinates: 102432394-102435678 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

774 bp · TkA08G402220|TK1151|cDNA

AAATATGAATATCAACTAATTGTCTAGGGGCTATTCTTGTATAAGGAAGAAAAACAAGGGTCTTGGAAGTTTGAAACCTTGTAAGCGGAGAGTTGTTAATTCTTAACCCAGCAGGTTCAAGTGACAAAAACAAAGGCGTCAATGAAGGCCGTGGTCCAGCGAGTTGCCTCCGCCAGCGTCGAGGTGGAAGGGCGCACAGTGTCGGCAATCGGGCCAGGGCTGCTTGTACTCGTTGGAATTCACGACCTCGATACGGATTC...

CDS

Download CDS FASTA

606 bp · TkA08G402220|TK1151|CDS

ATGAAGGCCGTGGTCCAGCGAGTTGCCTCCGCCAGCGTCGAGGTGGAAGGGCGCACAGTGTCGGCAATCGGGCCAGGGCTGCTTGTACTCGTTGGAATTCACGACCTCGATACGGATTCTGATGCCGACTATATATGTCGGAAGGTGTTGAACATGAGATTGTTTCCCAACGAAAAAACAGGCAAAACATGGGACCAAAACGTAATGCAGAAAAACTACGAGGTTCTATTAGTGAGTCAATTTACATTATATGGGATAAT...

Protein

Download Protein FASTA

201 aa · TkA08G402220|TK1151|PROTEIN

MKAVVQRVASASVEVEGRTVSAIGPGLLVLVGIHDLDTDSDADYICRKVLNMRLFPNEKTGKTWDQNVMQKNYEVLLVSQFTLYGIMKGNKPDFHVAMAPDRAKSFYASLVERFQRSYKSDAVKDGVFGAMMKVNLVNDGPVTMQLESPNSSSKWFYKTPKLFAWPENTLVAARLKNVSRGLFHLVSVKYYRSVVFIYLNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G402220`
TK1151 ID	TkA08G402220
OH-1004 ID	LXL04_034539
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 81.592 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G402220`
Location	Chr08:102432394-102435678 (+)
Description	Similar to dtd: D-aminoacyl-tRNA deacylase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034539` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006260 DNA replication Biological Process GO:0006399 tRNA metabolic process Biological Process GO:0019478 D-amino acid catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051500 D-tyrosyl-tRNA(Tyr) deacylase activity Molecular Function GO:0106026 Gly-tRNA(Ala) deacylase activity Molecular Function
KEGG gene cross-reference	bta:514493 ddi:DDB_G0291273 hsa:92675 mmu:66044 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.435

Rank 1 · TkA08G402220 · TK1151

Nucleus0.367

Rank 2 · TkA08G402220 · TK1151

Mitochondrion0.145

Rank 3 · TkA08G402220 · TK1151

Endoplasmic reticulum0.111

Rank 4 · TkA08G402220 · TK1151

Cell membrane0.104

Rank 5 · TkA08G402220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02580Tyr_Deacylase4-147 aa

PF29391DUF854034-54 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G402220	`PF02580`	Tyr_Deacylase	4	147	1.7e-52	178.3
TkA08G402220	`PF29391`	DUF8540	34	54	0.047	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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