Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1136 bp · TkA08G307780|TK1151|cDNA
ATTGGAGGATTGTTTGGCAGCCGTTAACCCACGTTTTAGCATAACAAAACCTTGTGAGAAGCAAAGCAGGAACCAACTCATGTGGCGGACATCAACCGGAAACCGCCATTCGCCAATAAAACTTGAACGCGAAATCAATGGCCACTCCATCCCCTCTGTTCCACCTGCGAACATCTTTCTTTCACGGTTTCACCATCAACACTACCAGACCCTTCTCTAATCCCTTCATTTCTCCTTTCAAACCCCACCGTTTTCACATC...
885 bp · TkA08G307780|TK1151|CDS
ATGGCCACTCCATCCCCTCTGTTCCACCTGCGAACATCTTTCTTTCACGGTTTCACCATCAACACTACCAGACCCTTCTCTAATCCCTTCATTTCTCCTTTCAAACCCCACCGTTTTCACATCAAATCAACCAAGATGGAAAATACAGCGGAAATAGAAGTGGGCGCCGGTGGAAAGAAGAAGATATTTGTATCAGGAGCCACCGGAAAAACTGGAAAAAGGATCGTCGAGCAACTACTGGCCAAGGGTTTCGCCGTCAA...
Protein
Download Protein FASTA294 aa · TkA08G307780|TK1151|PROTEIN
MATPSPLFHLRTSFFHGFTINTTRPFSNPFISPFKPHRFHIKSTKMENTAEIEVGAGGKKKIFVSGATGKTGKRIVEQLLAKGFAVKAGVRDAEKAKTIFPNLNEDFQIVKADVTEGSDKLAEAIGDDSDAVVCATGFQYSWDLLAPWKVDYYGTVNLVEACRKLGVTKFVLVSSILVNGAAMGQLLNPAYVFLNAFGLVLVAKFQAEQYIRKSGINYTIIRPGGLKNDPPNGNIVMEPEDTLSEGSISRDQVAEVAVEA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G307780 |
|---|---|
| TK1151 ID | TkA08G307780 |
| OH-1004 ID | LXL04_033906 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G307780 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:79627596-79629320 (-) | |||||||||
| Description | Similar to At2g34460: Uncharacterized protein At2g34460, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0015031 protein transport Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009579 thylakoid Cellular Component GO:0009706 chloroplast inner membrane Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0010287 plastoglobule Cellular Component GO:0048046 apoplast Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G34460 ath:AT2G37660 ath:AT3G18890 dosa:Os10g0100300 osa:4347935 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01488Shikimate_DH53-137 aaPF05368NmrA59-221 aaPF00106adh_short60-118 aaPF01113DapB_N61-132 aaPF04321RmlD_sub_bind61-225 aaPF01370Epimerase62-223 aaPF02719Polysacc_synt_262-175 aaPF16363GDP_Man_Dehyd63-176 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G307780 | PF01488 | Shikimate_DH | 53 | 137 | 0.029 | 15.2 |
| TkA08G307780 | PF05368 | NmrA | 59 | 221 | 3.9e-15 | 57.0 |
| TkA08G307780 | PF00106 | adh_short | 60 | 118 | 0.0061 | 16.8 |
| TkA08G307780 | PF01113 | DapB_N | 61 | 132 | 0.0051 | 17.6 |
| TkA08G307780 | PF04321 | RmlD_sub_bind | 61 | 225 | 0.0051 | 16.6 |
| TkA08G307780 | PF01370 | Epimerase | 62 | 223 | 6.2e-12 | 46.2 |
| TkA08G307780 | PF02719 | Polysacc_synt_2 | 62 | 175 | 0.0081 | 16.1 |
| TkA08G307780 | PF16363 | GDP_Man_Dehyd | 63 | 176 | 1e-06 | 29.2 |
| TkA08G307780 | PF03435 | Sacchrp_dh_NADP | 63 | 143 | 0.0022 | 19.0 |
| TkA08G307780 | PF08659 | KR | 63 | 85 | 0.04 | 14.6 |
| TkA08G307780 | PF01073 | 3Beta_HSD | 64 | 182 | 7.5e-10 | 39.0 |
| TkA08G307780 | PF07993 | NAD_binding_4 | 65 | 103 | 0.00011 | 22.1 |
| TkA08G307780 | PF13460 | NAD_binding_10 | 66 | 264 | 8e-46 | 156.9 |
| TkA08G307780 | PF03807 | F420_oxidored | 67 | 147 | 0.0064 | 17.8 |
| TkA08G307780 | PF02254 | TrkA_N | 68 | 137 | 0.18 | 12.9 |
| TkA08G307780 | PF03435 | Sacchrp_dh_NADP | 152 | 167 | 0.0022 | 19.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.