RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G301320
Reference: TK1151 Chr: Chr08 Coordinates: 78018675-78019356 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

546 bp · TkA08G301320|TK1151|cDNA

ATGAACAATGCATTACGAGGGCCAAGGCAATTGCTAATTAGGGCGTGTATTGACCTTACATTCAATAGAATCGTCCAACTTTTCAGAAAGCATAGTGGTATTGCAATGAACTGTATTACACATTTACCATTACGCATGTGGCGTCTCTTTAATAAGTGTGACGCTCATGCACAAAGTCATACTTTATCTGAGTTTCACTACAATGAAGTTTGTCGTAATAGAGGGGACAACCCTTTTTTCATTGTGAATAATGTGTACAA...

CDS

Download CDS FASTA

546 bp · TkA08G301320|TK1151|CDS

ATGAACAATGCATTACGAGGGCCAAGGCAATTGCTAATTAGGGCGTGTATTGACCTTACATTCAATAGAATCGTCCAACTTTTCAGAAAGCATAGTGGTATTGCAATGAACTGTATTACACATTTACCATTACGCATGTGGCGTCTCTTTAATAAGTGTGACGCTCATGCACAAAGTCATACTTTATCTGAGTTTCACTACAATGAAGTTTGTCGTAATAGAGGGGACAACCCTTTTTTCATTGTGAATAATGTGTACAA...

Protein

Download Protein FASTA

181 aa · TkA08G301320|TK1151|PROTEIN

MNNALRGPRQLLIRACIDLTFNRIVQLFRKHSGIAMNCITHLPLRMWRLFNKCDAHAQSHTLSEFHYNEVCRNRGDNPFFIVNNVYNTMTYKQQYNFEFVPLPHVDYWLDPNWTITADYSKLSVHQGRRCTNRIRNEMDTLHPDEPRTCGLCHQPGHNRRIVQILNQDSIHRELCFCFIVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G301320
TK1151 IDTkA08G301320
OH-1004 IDLXL04_012758
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)67.700
Protein coverage (%)TK1151 84.530 / OH-1004 40.081
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G301320
LocationChr08:78018675-78019356 (-)
DescriptionSimilar to ERF.C.3: Ethylene-response factor C3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006952 defense response Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010104 regulation of ethylene-activated signaling pathway Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G06160
ath:AT2G31230
ath:AT3G23240
sly:544042
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.849
Rank 1 · TkA08G301320 · TK1151
Cytoplasm0.239
Rank 2 · TkA08G301320 · TK1151
Mitochondrion0.031
Rank 3 · TkA08G301320 · TK1151
Cell membrane0.021
Rank 4 · TkA08G301320 · TK1151
Endoplasmic reticulum0.020
Rank 5 · TkA08G301320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser