TkA08G297760 | RubberDandelionOmics

Gene overview

TkA08G297760

Reference: TK1151 Chr: Chr08 Coordinates: 77166243-77174225 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3858 bp · TkA08G297760|TK1151|cDNA

ATGGAAGATTACATCACTGGTATTGAAAAAGTAGGTATGGATGTTTGGTATTCTATCATTGATGGTCCTTATACTGGTCCTGAAGTCAAAACACCAATCACAACAATGAAAGAGTACAAACAGCTTCAAGAGCGAAAAGAAGATTTACCAAGCGGTGTTAAAACCCTGATTGAAGCAGATCTACGCGCCAAGAGAGAATTGAGATTTGGCCTAACTCCTAGTTCTCTCAGATTAATCGAACCCTGTCAAACTGCTCACCA...

CDS

Download CDS FASTA

3858 bp · TkA08G297760|TK1151|CDS

ATGGAAGATTACATCACTGGTATTGAAAAAGTAGGTATGGATGTTTGGTATTCTATCATTGATGGTCCTTATACTGGTCCTGAAGTCAAAACACCAATCACAACAATGAAAGAGTACAAACAGCTTCAAGAGCGAAAAGAAGATTTACCAAGCGGTGTTAAAACCCTGATTGAAGCAGATCTACGCGCCAAGAGAGAATTGAGATTTGGCCTAACTCCTAGTTCTCTCAGATTAATCGAACCCTGTCAAACTGCTCACCA...

Protein

Download Protein FASTA

1285 aa · TkA08G297760|TK1151|PROTEIN

MEDYITGIEKVGMDVWYSIIDGPYTGPEVKTPITTMKEYKQLQERKEDLPSGVKTLIEADLRAKRELRFGLTPSSLRLIEPCQTAHHIWIKLRDLYGSNEFVDSIQSSLLAEYGAFKQASDETIDKTSERFHQLLSRMEKYVLARKEVEKKTTILQSLRSEFFNIGQTIRGHEQFKNYKMPEVLGILKAHKAELKEIKVSSSDSESEESDSEWTLEDKDLMVSNPRKFFKKNYSKFNNPKLENKRSYGGGSNYKKREEEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G297760`
TK1151 ID	TkA08G297760
OH-1004 ID	LXL04_028986
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.800
Protein coverage (%)	TK1151 85.370 / OH-1004 98.344 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G297760

Location Chr08:77166243-77174225 (+)

Description Similar to GIP: Copia protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`UniProt: P92519`	Uncharacterized mitochondrial protein AtMg00810.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028986 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0071897 DNA biosynthetic process Biological Process

GO:0042575 DNA polymerase complex Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.512

Rank 1 · TkA08G297760 · TK1151

Cytoplasm0.468

Rank 2 · TkA08G297760 · TK1151

Mitochondrion0.049

Rank 3 · TkA08G297760 · TK1151

Cell membrane0.031

Rank 4 · TkA08G297760 · TK1151

Endoplasmic reticulum0.028

Rank 5 · TkA08G297760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_228-191 aa

PF14712Snapin_Pallidin121-160 aa

PF00098zf-CCHC281-294 aa

PF14223Retrotran_gag_2395-429 aa

PF14712Snapin_Pallidin396-421 aa

PF13976gag_pre-integrs473-525 aa

PF14712Snapin_Pallidin586-632 aa

PF07727RVT_2680-922 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G297760	`PF14223`	Retrotran_gag_2	28	191	5.7e-12	46.4
TkA08G297760	`PF14712`	Snapin_Pallidin	121	160	3.6	8.8
TkA08G297760	`PF00098`	zf-CCHC	281	294	3.5	8.6
TkA08G297760	`PF14223`	Retrotran_gag_2	395	429	5.7e-12	46.4
TkA08G297760	`PF14712`	Snapin_Pallidin	396	421	3.6	8.8
TkA08G297760	`PF13976`	gag_pre-integrs	473	525	5.6e-10	39.6
TkA08G297760	`PF14712`	Snapin_Pallidin	586	632	3.6	8.8
TkA08G297760	`PF07727`	RVT_2	680	922	2.2e-76	257.4
TkA08G297760	`PF00098`	zf-CCHC	1170	1175	3.5	8.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	38.100%	Swiss-Prot	Low
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	37.300%	Swiss-Prot	Low
`P92519`	Arabidopsis thaliana	sp\|P92519\|M810_ARATH Uncharacterized mitochondrial protein AtMg00810	33.900%	Swiss-Prot	Low

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