TkA08G295720 | RubberDandelionOmics

Gene overview

TkA08G295720

Reference: TK1151 Chr: Chr08 Coordinates: 76628866-76629358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · TkA08G295720|TK1151|cDNA

ATGGAATCGATGGGCGCCATGGTTCGTGTTTGCAAGAGTACCGATCTTTTGAAGTACAATCCAATTTGTAAGAAAGTACCGGTGTTGGTTCATAACGGAAAGCCGATCTTGGAGTCCCTTGTGTTCGTCGAGTACATCGACGATGCCTGGAAAGGAGTTCCGATTTTTCCCCTCAATCCTTACGAGACGGTCGTCGCTCGATTTTTGGCCAAATTCATCGACGAAAAGTGCTTGCCTGCAATTAAAGCTGTCGGTACCAA...

CDS

Download CDS FASTA

402 bp · TkA08G295720|TK1151|CDS

ATGGAATCGATGGGCGCCATGGTTCGTGTTTGCAAGAGTACCGATCTTTTGAAGTACAATCCAATTTGTAAGAAAGTACCGGTGTTGGTTCATAACGGAAAGCCGATCTTGGAGTCCCTTGTGTTCGTCGAGTACATCGACGATGCCTGGAAAGGAGTTCCGATTTTTCCCCTCAATCCTTACGAGACGGTCGTCGCTCGATTTTTGGCCAAATTCATCGACGAAAAGTGCTTGCCTGCAATTAAAGCTGTCGGTACCAA...

Protein

Download Protein FASTA

133 aa · TkA08G295720|TK1151|PROTEIN

MESMGAMVRVCKSTDLLKYNPICKKVPVLVHNGKPILESLVFVEYIDDAWKGVPIFPLNPYETVVARFLAKFIDEKCLPAIKAVGTNGDDHQAIAEACAQLQVLENELKVKGTKFFGGDNMGCHYLFLYVFWE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G295720`
TK1151 ID	TkA08G295720
OH-1004 ID	LXL04_018510
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	89.200
Protein coverage (%)	TK1151 83.459 / OH-1004 50.455 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G295720

Location Chr08:76628866-76629358 (-)

Description Similar to HSP26-A: Probable glutathione S-transferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29420`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release
`At3g09270`	May be involved in the conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles and have a detoxification role against certain herbicides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018510 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0009407 toxin catabolic process Biological Process

GO:0009408 response to heat Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010038 response to metal ion Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G29420

ath:AT3G09270

gmx:100527851

nta:107765700

nta:107802704

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.699

Rank 1 · TkA08G295720 · TK1151

Nucleus0.158

Rank 2 · TkA08G295720 · TK1151

Endoplasmic reticulum0.089

Rank 3 · TkA08G295720 · TK1151

Mitochondrion0.079

Rank 4 · TkA08G295720 · TK1151

Peroxisome0.077

Rank 5 · TkA08G295720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02798GST_N12-47 aa

PF13409GST_N_213-48 aa

PF13417GST_N_316-49 aa

PF13409GST_N_278-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G295720	`PF02798`	GST_N	12	47	9.3e-09	36.2
TkA08G295720	`PF13409`	GST_N_2	13	48	1.6e-05	26.1
TkA08G295720	`PF13417`	GST_N_3	16	49	0.00014	22.9
TkA08G295720	`PF13409`	GST_N_2	78	106	1.6e-05	26.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZW24`	Arabidopsis thaliana	sp\|Q9ZW24\|GSTU7_ARATH Glutathione S-transferase U7	50.400%	Swiss-Prot	High
`Q9SR36`	Arabidopsis thaliana	sp\|Q9SR36\|GSTU8_ARATH Glutathione S-transferase U8	50.900%	Swiss-Prot	High

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