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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G295610
Reference: TK1151 Chr: Chr08 Coordinates: 76602535-76606284 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2987 bp · TkA08G295610|TK1151|cDNA

TGTCAGTGTGCTTATTTTATATATGTTTATAGCTTAGTCTACATACAGTTGTCCTTATATAAACAATGAATTAGATGAAAAATACATATTTGCATTCCATATCTCCGCTATACGGTTGACCTCTACCTTACGTACCTCCTCCCATTGCTGCTACCGGCCTTGTACATCTCCTCCTCCATCCCCCTCCGCCGAAAACTACCACTGTACAACCGCCATCCCTGGTTTTCACCATCAATCTACGGGCCCAATACCTTGTCCAT...

CDS

Download CDS FASTA

1272 bp · TkA08G295610|TK1151|CDS

ATGCTTGTTTATCGTGAAAGAAGTATTGGAGATGAGCAACAACTCCTGATGAATATCGTCCGCCGATGCCAAGAGAATGAACCAGACGAGGTAACTGATCCTTATATAAGAGATCAAATTAACTCTAGTTCTTTTAATACATTCAAAGAAATCGCATATGAGTGCATTAATTTCAAATTAAAGGAACGACCTATGCTTGGCACCGTCGTTAAGAAGATTGAGGAAGCATTAATTATCCAAATGTCCGCCCCTGCAGATCA...

Protein

Download Protein FASTA

423 aa · TkA08G295610|TK1151|PROTEIN

MLVYRERSIGDEQQLLMNIVRRCQENEPDEVTDPYIRDQINSSSFNTFKEIAYECINFKLKERPMLGTVVKKIEEALIIQMSAPADHPTIESLFRKLNSISPYQQLIASGEISGLTKTSPENRVAFAKAGVIPVLTNLLTTTDSRTQEHAVTTLLNLSIYEENKGIIVSSKAFPGIVHVLRNGSMVARENAAATLFSLSVIDEKLKDVKIDFGGTISPLVLLLSEGTERGKRMATNALFNLCIDDELNKRRVVRAGVVPM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G295610
TK1151 IDTkA08G295610
OH-1004 IDLXL04_000730
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)47.100
Protein coverage (%)TK1151 86.525 / OH-1004 40.175
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G295610
LocationChr08:76602535-76606284 (-)
DescriptionSimilar to PUB13: U-box domain-containing protein 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46510 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At2g28830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54850 Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes.
Structure and biochemical function of a prototypical Arabidopsis U-box domain.2004 · DOI: 10.1074/jbc.m405057200

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0234300 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Os06g0102700 Possesses E3 ubiquitin-protein ligase in vitro. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000730 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT3G46290
ath:AT3G46510
ath:AT5G59700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.552
Rank 1 · TkA08G295610 · TK1151
Nucleus0.367
Rank 2 · TkA08G295610 · TK1151
Cell membrane0.175
Rank 3 · TkA08G295610 · TK1151
Endoplasmic reticulum0.054
Rank 4 · TkA08G295610 · TK1151
Lysosome / Vacuole0.038
Rank 5 · TkA08G295610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11698V-ATPase_H_C88-156 aa
PF25598ARM_PUB110-367 aa
PF00514Arm119-158 aa
PF24768ARM_ARMC5119-265 aa
PF05804KAP126-180 aa
PF30701ARMC6126-152 aa
PF13646HEAT_2128-156 aa
PF14664RICTOR_N128-198 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G295610PF11698V-ATPase_H_C881560.212.5
TkA08G295610PF25598ARM_PUB1103673.4e-1866.8
TkA08G295610PF00514Arm1191581.4e-2589.1
TkA08G295610PF24768ARM_ARMC51192651.1e-1455.2
TkA08G295610PF05804KAP1261800.001517.6
TkA08G295610PF30701ARMC61261520.1411.4
TkA08G295610PF13646HEAT_21281560.001519.5
TkA08G295610PF14664RICTOR_N1281980.2311.1
TkA08G295610PF13513HEAT_EZ1311540.03415.4
TkA08G295610PF03224V-ATPase_H_N1332400.2611.4
TkA08G295610PF04826Arm_21342100.008616.3
TkA08G295610PF00514Arm1621991.4e-2589.1
TkA08G295610PF23628ARM_LIN_C1621980.02214.5
TkA08G295610PF13513HEAT_EZ1711950.03415.4
TkA08G295610PF00514Arm2142421.4e-2589.1
TkA08G295610PF14664RICTOR_N2182790.2311.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SNC6Arabidopsis thalianasp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 1337.400%Swiss-ProtMedium
Q9ZV31Arabidopsis thalianasp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 1232.400%Swiss-ProtMedium
Q8VZ40Arabidopsis thalianasp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 1433.800%Swiss-ProtMedium
Q6EUK7Oryza sativa subsp. japonicasp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 436.400%Swiss-ProtMedium
Q5VRH9Oryza sativa subsp. japonicasp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 1231.100%Swiss-ProtMedium

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