TkA08G277070 | RubberDandelionOmics

Gene overview

TkA08G277070

Reference: TK1151 Chr: Chr08 Coordinates: 72083027-72085036 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1698 bp · TkA08G277070|TK1151|cDNA

ATGTTACAAAATCCATCACAGAAATTGGGCGGGGAAGTTGTGATTGGCGAGAAGCAGGAGTATGGTAAAATGGTGGTTGAGGTTGTAGAAGATTGTGGAGGGCTGTTTGAGGGTAAGAAGATTGGCGATAAACAGGTTGTTTGGTTGAGCCATGGCGATGAGGCTGTGGAGCTTCCGGAAGGATTCAAGGTAGTTGCGAGGAGAAAGAGCTGTGGCGGTGGTGGAGAATCCCAGCAAGAGGTTTTATCAGGAAGAAATAA...

CDS

Download CDS FASTA

1698 bp · TkA08G277070|TK1151|CDS

ATGTTACAAAATCCATCACAGAAATTGGGCGGGGAAGTTGTGATTGGCGAGAAGCAGGAGTATGGTAAAATGGTGGTTGAGGTTGTAGAAGATTGTGGAGGGCTGTTTGAGGGTAAGAAGATTGGCGATAAACAGGTTGTTTGGTTGAGCCATGGCGATGAGGCTGTGGAGCTTCCGGAAGGATTCAAGGTAGTTGCGAGGAGAAAGAGCTGTGGCGGTGGTGGAGAATCCCAGCAAGAGGTTTTATCAGGAAGAAATAA...

Protein

Download Protein FASTA

565 aa · TkA08G277070|TK1151|PROTEIN

MLQNPSQKLGGEVVIGEKQEYGKMVVEVVEDCGGLFEGKKIGDKQVVWLSHGDEAVELPEGFKVVARRKSCGGGGESQQEVLSGRNKSISTSTSSVFYLFTILTFNIRLKGVPGTVVAWCVCGHEPRACTPPRVLVVEGCRGEDFFIISTSMDPSQNTPPQSRRRDHDHFALNTTPQQYPAMESPQGGFVNLLQSGSPIPQQALFQHQAPPFNPFQAPPQQPLFQHQPPPLYQTAFFYQQPPQLQQPPQRIQPEPAPEFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G277070`
TK1151 ID	TkA08G277070
OH-1004 ID	LXL04_023235
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	67.900
Protein coverage (%)	TK1151 19.823 / OH-1004 76.692 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G277070`
Location	Chr08:72083027-72085036 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023235` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955

Rank 1 · TkA08G277070 · TK1151

Cytoplasm0.108

Rank 2 · TkA08G277070 · TK1151

Cell membrane0.021

Rank 3 · TkA08G277070 · TK1151

Mitochondrion0.017

Rank 4 · TkA08G277070 · TK1151

Endoplasmic reticulum0.013

Rank 5 · TkA08G277070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14303NAM-associated268-312 aa

PF13837Myb_DNA-bind_4304-364 aa

PF13873Myb_DNA-bind_5330-364 aa

PF13873Myb_DNA-bind_5403-423 aa

PF14303NAM-associated407-557 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G277070	`PF14303`	NAM-associated	268	312	9.6e-13	50.0
TkA08G277070	`PF13837`	Myb_DNA-bind_4	304	364	0.021	15.9
TkA08G277070	`PF13873`	Myb_DNA-bind_5	330	364	0.22	12.2
TkA08G277070	`PF13873`	Myb_DNA-bind_5	403	423	0.22	12.2
TkA08G277070	`PF14303`	NAM-associated	407	557	9.6e-13	50.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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