TkA08G268940 | RubberDandelionOmics

Gene overview

TkA08G268940

Reference: TK1151 Chr: Chr08 Coordinates: 70106687-70107699 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · TkA08G268940|TK1151|cDNA

GGCTTTCGGCTAGCGGCGTCCCACCTGGAGGACTTTACCGCTGGCGAACGGCATGGAGCGGGGGAATGCAGCGGCAAACGCCGCCAGCGGCATTCTCCACCGACGAGATACAATAAAAATGCTTCATCAAATCGTAGAGGGTCTAGCTCTTCTTCGCAACAAAACGAAGATAGCCCTCCGCAACAAGAGGGATACCGCCCAACATTCGATCCTATGCTACATCAACAACAGCTGGCGTTTCAAGCATGGATGCAAACACA...

CDS

Download CDS FASTA

738 bp · TkA08G268940|TK1151|CDS

GGCTTTCGGCTAGCGGCGTCCCACCTGGAGGACTTTACCGCTGGCGAACGGCATGGAGCGGGGGAATGCAGCGGCAAACGCCGCCAGCGGCATTCTCCACCGACGAGATACAATAAAAATGCTTCATCAAATCGTAGAGGGTCTAGCTCTTCTTCGCAACAAAACGAAGATAGCCCTCCGCAACAAGAGGGATACCGCCCAACATTCGATCCTATGCTACATCAACAACAGCTGGCGTTTCAAGCATGGATGCAAACACA...

Protein

Download Protein FASTA

245 aa · TkA08G268940|TK1151|PROTEIN

GFRLAASHLEDFTAGERHGAGECSGKRRQRHSPPTRYNKNASSNRRGSSSSSQQNEDSPPQQEGYRPTFDPMLHQQQLAFQAWMQTQPQYQYQYPTPQYLYQSPQPQYQTPLPQFQTPSPQFQTPSPLSHTSSPQFEPPSPFTEESTQEVLETQEEASDTEESDEEEGGRSKGKVVRKNWTNREEEVLAEAWCGHSGDARYGNDQNAKQFWKHVTRRFNKILGKGRHYRSFDQCNSKWNKMNREV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G268940`
TK1151 ID	TkA08G268940
OH-1004 ID	LXL04_010896
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	63.400
Protein coverage (%)	TK1151 98.367 / OH-1004 15.980 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G268940`
Location	Chr08:70106687-70107699 (-)
Description	Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010896` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963

Rank 1 · TkA08G268940 · TK1151

Cytoplasm0.131

Rank 2 · TkA08G268940 · TK1151

Cell membrane0.016

Rank 3 · TkA08G268940 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA08G268940 · TK1151

Mitochondrion0.012

Rank 5 · TkA08G268940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17529DUF545012-33 aa

PF15087DUF455126-164 aa

PF17061PARM30-180 aa

PF27836GIP432-173 aa

PF13837Myb_DNA-bind_4177-243 aa

PF13873Myb_DNA-bind_5178-244 aa

PF17529DUF5450190-229 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G268940	`PF17529`	DUF5450	12	33	1.0	10.1
TkA08G268940	`PF15087`	DUF4551	26	164	9.5	5.8
TkA08G268940	`PF17061`	PARM	30	180	0.84	10.4
TkA08G268940	`PF27836`	GIP4	32	173	0.41	9.8
TkA08G268940	`PF13837`	Myb_DNA-bind_4	177	243	1.1e-06	29.6
TkA08G268940	`PF13873`	Myb_DNA-bind_5	178	244	0.0012	19.4
TkA08G268940	`PF17529`	DUF5450	190	229	1.0	10.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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