TkA08G266790 | RubberDandelionOmics

Gene overview

TkA08G266790

Reference: TK1151 Chr: Chr08 Coordinates: 69540363-69545311 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3329 bp · TkA08G266790|TK1151|cDNA

CAAGAATGAAAAAGCAAAAAAGTCATGGGGGTGGTCTTTGTTGTTCTTCTTCTTGTTCTTTGTCAAATTATAGTAGAAACACTGCTGCAATCATATCCTACGTCTATAAGGCGTGCAATCACATCCTACACGAGCCTTGTTTTTCAAAGCTGTGGGTTTTAAATGAAGTGTGAGGGTGAGGGCGTGGAAGTAGTAGCGTTTCAATTTCCAAGCTTTTGCCGGAGAATATGGACCGCCGGAGTTGGCTTTGGCGGAAGAAG...

CDS

Download CDS FASTA

1890 bp · TkA08G266790|TK1151|CDS

ATGGACCGCCGGAGTTGGCTTTGGCGGAAGAAGTCGTCGGAAAGGAGTCTCGGAGAAACTGAAAGCTCTGTAGGATCCATGTCCTCTCATTCCGAGAGATTTTCCGATGACCAGGTATACTTGAATCAGAATTTTCAATCACTCGAAGTTGGACCAAAGTCAGACCCAAGCCAGAGTGAACATAACAATGGCGTCAAGAGCCTTTCAGAGAAATTAGAGGAAGCTCTTGCGATTATTAATGCCAAAGAACAATTGGTAAA...

Protein

Download Protein FASTA

629 aa · TkA08G266790|TK1151|PROTEIN

MDRRSWLWRKKSSERSLGETESSVGSMSSHSERFSDDQVYLNQNFQSLEVGPKSDPSQSEHNNGVKSLSEKLEEALAIINAKEQLVNQHAKVAEEAVSGWEKSESEVLALRQEIEALTVRNSTLEDRIVQLDGALKECLRQLRQTREEKDQIALEKKNSEPESSTTAIHIDLIHKLEMKEKENSDLKLELSSMAEELEIRLVERELSNKAAEQASKQLLDSVKKVAKLEAECHRLNSCLEKVNNQESKVRKMLSVNERKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G266790`
TK1151 ID	TkA08G266790
OH-1004 ID	LXL04_030378
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	44.900
Protein coverage (%)	TK1151 45.151 / OH-1004 54.651 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G266790

Location Chr08:69540363-69545311 (-)

Description Similar to FPP: Filament-like plant protein (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05270`	Ensures, when in complex with COG2 and FPP2/VETH2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1.	No verified direct reference in this release
`At1g77580`	Filament-like plant protein 1.	No verified direct reference in this release
`At1g21810`	Ensures, when in complex with FPP3/VETH1 and COG2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1.	No verified direct reference in this release
`At1g19835`	Filament-like plant protein 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030378 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0060178 regulation of exocyst localization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0031410 cytoplasmic vesicle Cellular Component

GO:0030674 protein-macromolecule adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT1G21810

ath:AT1G77580

ath:AT3G05270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.510

Rank 1 · TkA08G266790 · TK1151

Cell membrane0.286

Rank 2 · TkA08G266790 · TK1151

Nucleus0.254

Rank 3 · TkA08G266790 · TK1151

Golgi apparatus0.062

Rank 4 · TkA08G266790 · TK1151

Plastid0.054

Rank 5 · TkA08G266790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25443ANG-116-48 aa

PF30679CCDC18_2nd36-177 aa

PF00261Tropomyosin41-86 aa

PF28256CCDC17141-270 aa

PF19220Rod_CreS56-90 aa

PF30842LEKR158-144 aa

PF29090PEA2_C60-90 aa

PF05557MAD61-228 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G266790	`PF25443`	ANG-1	16	48	0.015	16.2
TkA08G266790	`PF30679`	CCDC18_2nd	36	177	3.3	6.4
TkA08G266790	`PF00261`	Tropomyosin	41	86	4.8e-10	40.0
TkA08G266790	`PF28256`	CCDC171	41	270	0.022	12.9
TkA08G266790	`PF19220`	Rod_CreS	56	90	0.046	13.6
TkA08G266790	`PF30842`	LEKR1	58	144	4.1	8.4
TkA08G266790	`PF29090`	PEA2_C	60	90	0.0049	17.7
TkA08G266790	`PF05557`	MAD	61	228	0.066	12.3
TkA08G266790	`PF24161`	CCDC39	62	257	1.4e-09	37.2
TkA08G266790	`PF06008`	Laminin_I	62	156	0.02	15.3
TkA08G266790	`PF28019`	HmpF	63	148	1.5e-06	27.7
TkA08G266790	`PF23649`	FKBP15	65	157	1.6e-05	25.3
TkA08G266790	`PF00700`	Flagellin_C	69	91	4.5	8.4
TkA08G266790	`PF12795`	MscS_porin	79	155	8.2	6.7
TkA08G266790	`PF05911`	FPP	82	151	3.6e-61	208.3
TkA08G266790	`PF00261`	Tropomyosin	92	246	4.8e-10	40.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9MA92`	Arabidopsis thaliana	sp\|Q9MA92\|FPP3_ARATH Filament-like plant protein 3	46.800%	Swiss-Prot	Low
`Q9CAP9`	Arabidopsis thaliana	sp\|Q9CAP9\|FPP1_ARATH Filament-like plant protein 1	40.900%	Swiss-Prot	Low
`Q9SFF4`	Arabidopsis thaliana	sp\|Q9SFF4\|FPP2_ARATH Filament-like plant protein 2	40.900%	Swiss-Prot	Low
`Q0WSY2`	Arabidopsis thaliana	sp\|Q0WSY2\|FPP4_ARATH Filament-like plant protein 4	36.900%	Swiss-Prot	Low

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