TkA08G261640 | RubberDandelionOmics

Gene overview

TkA08G261640

Reference: TK1151 Chr: Chr08 Coordinates: 68236603-68240560 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1696 bp · TkA08G261640|TK1151|cDNA

CTCAATGTTTCGGTGATATATAAATTCGCGAAAGACACGCATTTGATTCGATTTGGAAATTGGAACCCTACCTCCATCCAGATTACCTTCAGTCGATCTGTATCACGTTTTGCCCTTTGCGTTAATCGCCAGTTCGATCCAACATGGATGAAGAGTATGATGTCATCGTCCTCGGTACTGGTCTCAAGGAATGCATCCTCAGCGGTCTTCTCTCGGTCGACGGTCTCAAGGTTCTACACATGGACAGGAATGATTACTAT...

CDS

Download CDS FASTA

1335 bp · TkA08G261640|TK1151|CDS

ATGGATGAAGAGTATGATGTCATCGTCCTCGGTACTGGTCTCAAGGAATGCATCCTCAGCGGTCTTCTCTCGGTCGACGGTCTCAAGGTTCTACACATGGACAGGAATGATTACTATGGTGGAGAATCAACCTCACTTAATCTAATCCAGCTATGGAAGAAATTCAGAGGAAGTGACAAACCTCCAGCTCACTTAGGTTCCAGTAGAGATTACAACGTGGACATGGTCCCCAAGTTTATAATGGCAAATGGTGCACTTGT...

Protein

Download Protein FASTA

444 aa · TkA08G261640|TK1151|PROTEIN

MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKKFRGSDKPPAHLGSSRDYNVDMVPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYNENDPKTHEGMDLTRVTTKELIAKYGLDDNTIDFIGHALALHRDDRYLHEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G261640`
TK1151 ID	TkA08G261640
OH-1004 ID	LXL04_033422
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G261640

Location Chr08:68236603-68240560 (+)

Description Similar to GDI1: Guanosine nucleotide diphosphate dissociation inhibitor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44100`	Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.	No verified direct reference in this release
`At3g59920`	Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.	AtGDI2, a novel Arabidopsis gene encoding a Rab GDP dissociation inhibitor.1998 · DOI: 10.1016/s0378-1119(97)00584-2
`At5g09550`	Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033422 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007264 small GTPase-mediated signal transduction Biological Process

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0032482 Rab protein signal transduction Biological Process

GO:0034123 positive regulation of toll-like receptor signaling pathway Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0090315 negative regulation of protein targeting to membrane Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT2G44100

ath:AT3G59920

ath:AT5G09550

rno:25183

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.634

Rank 1 · TkA08G261640 · TK1151

Nucleus0.277

Rank 2 · TkA08G261640 · TK1151

Mitochondrion0.165

Rank 3 · TkA08G261640 · TK1151

Cell membrane0.103

Rank 4 · TkA08G261640 · TK1151

Endoplasmic reticulum0.091

Rank 5 · TkA08G261640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00996GDI1-433 aa

PF12564TypeIII_RM_meth17-29 aa

PF12564TypeIII_RM_meth85-116 aa

PF01593Amino_oxidase102-283 aa

PF12564TypeIII_RM_meth396-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G261640	`PF00996`	GDI	1	433	6.2e-234	777.0
TkA08G261640	`PF12564`	TypeIII_RM_meth	17	29	0.16	13.1
TkA08G261640	`PF12564`	TypeIII_RM_meth	85	116	0.16	13.1
TkA08G261640	`PF01593`	Amino_oxidase	102	283	1.9e-05	24.8
TkA08G261640	`PF12564`	TypeIII_RM_meth	396	406	0.16	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q96254`	Arabidopsis thaliana	sp\|Q96254\|GDI1_ARATH Guanosine nucleotide diphosphate dissociation inhibitor 1	85.100%	Swiss-Prot	High
`O24653`	Arabidopsis thaliana	sp\|O24653\|GDI2_ARATH Guanosine nucleotide diphosphate dissociation inhibitor 2	85.100%	Swiss-Prot	High
`Q9LXC0`	Arabidopsis thaliana	sp\|Q9LXC0\|GDI_ARATH Guanosine nucleotide diphosphate dissociation inhibitor At5g09550	81.500%	Swiss-Prot	High

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