TkA08G259490 | RubberDandelionOmics

Gene overview

TkA08G259490

Reference: TK1151 Chr: Chr08 Coordinates: 67669983-67671310 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1195 bp · TkA08G259490|TK1151|cDNA

CCTTATCATAAAGAGACTAATTGGCAATTTAGAAGTTAATCTTTTAAAGTGAAGGCCATTATTAGTTTGATCACTAAAATAATGAGATTAATAGCTGGTATGTCTGGATTTCATAGTGAAAGGCACAGAATTTTATAGTGTCTCCTTCCTTCCACTTTCCATTTGTCAAGTTCTTACCCCCTTCTCTTTCTCTCTACCAACCTCCATAACTCATGTATGCATATAAACCTCCATAGATCTCCTTCCAAGCACCAAAACCC...

CDS

Download CDS FASTA

660 bp · TkA08G259490|TK1151|CDS

ATGGCCATATCTCCAAGAAAGCTTAGAAACGATGTGTATTCATACTCATACCAAAACGACTCGAACACCCCTCTAGTCATCTCAGTTCTTGCTTCTTTAATCGAAAGAACTTTGGTTAGAAATGAAAGAATTGGTAGAAATTGTGGTGCCAAAATCACAAAGAATGCTTCCAAAACTAGGGTTTTTGATTGCCATGAGACACCCGACATGACAATTCAATCCTATCTTGAGAGGATTTTCCGGTACACCAAAGCAGGGCC...

Protein

Download Protein FASTA

219 aa · TkA08G259490|TK1151|PROTEIN

MAISPRKLRNDVYSYSYQNDSNTPLVISVLASLIERTLVRNERIGRNCGAKITKNASKTRVFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCRSHPEFRITGRNVHRLLITTIMVASKYVEDMNYRNSYFARVGGITTKEMNSLELDFLFLMNFKMHVNVSVFESYCCHLEREVSIGGGYHIEKTLRCAEEIKSRQIVERGFNRITRITL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G259490`
TK1151 ID	TkA08G259490
OH-1004 ID	LXL04_010453
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	85.600
Protein coverage (%)	TK1151 100.000 / OH-1004 97.333 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G259490

Location Chr08:67669983-67671310 (+)

Description Similar to CYCU2-2: Cyclin-U2-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45080`	Cyclin-U2-1.	No verified direct reference in this release
`At3g60550`	Cyclin-U2-2.	No verified direct reference in this release
`At2g44740`	Cyclin-U4-1.	No verified direct reference in this release
`At3g21870`	Cyclin-U1-1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0552300`	Cyclin-P2-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010453 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0019901 protein kinase binding Molecular Function

KEGG gene cross-reference

ath:AT2G44740

ath:AT2G45080

ath:AT3G60550

ath:AT5G07450

dosa:Os04g0552300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.757

Rank 1 · TkA08G259490 · TK1151

Cytoplasm0.257

Rank 2 · TkA08G259490 · TK1151

Mitochondrion0.051

Rank 3 · TkA08G259490 · TK1151

Plastid0.022

Rank 4 · TkA08G259490 · TK1151

Cell membrane0.018

Rank 5 · TkA08G259490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08613Cyclin31-165 aa

PF00134Cyclin_N72-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G259490	`PF08613`	Cyclin	31	165	1.2e-36	127.0
TkA08G259490	`PF00134`	Cyclin_N	72	165	3.1e-10	40.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SHD3`	Arabidopsis thaliana	sp\|Q9SHD3\|CCU21_ARATH Cyclin-U2-1	79.400%	Swiss-Prot	High
`Q9M205`	Arabidopsis thaliana	sp\|Q9M205\|CCU22_ARATH Cyclin-U2-2	75.800%	Swiss-Prot	High
`O80513`	Arabidopsis thaliana	sp\|O80513\|CCU41_ARATH Cyclin-U4-1	45.200%	Swiss-Prot	Medium
`Q9LJ45`	Arabidopsis thaliana	sp\|Q9LJ45\|CCU11_ARATH Cyclin-U1-1	39.600%	Swiss-Prot	Medium
`Q7FAT5`	Oryza sativa subsp. japonica	sp\|Q7FAT5\|CCP21_ORYSJ Cyclin-P2-1	49.300%	Swiss-Prot	Medium

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