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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G252530
Reference: TK1151 Chr: Chr08 Coordinates: 65930411-65932866 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1071 bp · TkA08G252530|TK1151|cDNA

GCAAATTGGGTACAAAACCTTTAGGGTTTCCAAACTCAATTTACCGAGTTCTCCTAAATATCACAAGAGAAGCCATACAACCCGATCCATTTAGATCCTCATCTTCGCTTTCACTGCAGCCACCGTCGACTGTAAAACCCTAGCACTCGCTGCACCATGATTTGTTCAATTTCGGCGAGGTGCCGGAAGAACCTGTTGTTTCTAAGTCATCCGGACTACTTTTCGAGAAGCGGTTGATCGAAAGACACATACTGGACTAC...

CDS

Download CDS FASTA

441 bp · TkA08G252530|TK1151|CDS

ATGATGAGGTGGGGCCAGATGGCAAGAAAATCCGTGCTGTGGAATTTCAGCCAGTATAATCACGATGTTAAAAGACTGCAATTGCTGCACTTTCACAGCAAAGGAAGAAAAGACAGATTTCTCCCACTTTGTTCTTTGGATGCTATTGAGAGGTATACTCAGCTTACCAGTTACCTCTTCACAAAACAAACAAAGCTGGAATTGTCTATTGATATCCATCAATCAAAGGATCTTATTGCTACTGGTGGAGTTGATATGAA...

Protein

Download Protein FASTA

147 aa · TkA08G252530|TK1151|PROTEIN

MMRWGQMARKSVLWNFSQYNHDVKRLQLLHFHSKGRKDRFLPLCSLDAIERYTQLTSYLFTKQTKLELSIDIHQSKDLIATGGVDMNAVVFNRSSGEIVSTLSGHSKKVTSVKFVSDGELVVTGSTDKIRVWQGSENGNYDCKHVLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G252530
TK1151 IDTkA08G252530
OH-1004 IDLXL04_035854
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)46.400
Protein coverage (%)TK1151 37.415 / OH-1004 14.359
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G252530
LocationChr08:65930411-65932866 (-)
DescriptionSimilar to AAMP: Angio-associated migratory cell protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g04510 Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity).
Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity.2009 · DOI: 10.1371/journal.ppat.1000526
At2g33340 Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair (By similarity).
Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity.2009 · DOI: 10.1371/journal.ppat.1000526

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0466300 Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010595 positive regulation of endothelial cell migration Biological Process
GO:0014909 smooth muscle cell migration Biological Process
GO:0030154 cell differentiation Biological Process
GO:0180023 cytosolic large ribosomal subunit assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009986 cell surface Cellular Component
GO:0030687 preribosome, large subunit precursor Cellular Component
GO:0008201 heparin binding Molecular Function
KEGG gene cross-reference
bta:767919
cfa:478908
hsa:14
pon:100172186
spo:2542715
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.571
Rank 1 · TkA08G252530 · TK1151
Cytoplasm0.326
Rank 2 · TkA08G252530 · TK1151
Mitochondrion0.075
Rank 3 · TkA08G252530 · TK1151
Cell membrane0.065
Rank 4 · TkA08G252530 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA08G252530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25175Beta-prop_WDR561-135 aa
PF24817WD40_WDHD1_1st61-138 aa
PF25174Beta-prop_THOC362-133 aa
PF23409Beta-prop_EML62-133 aa
PF24814WD40_Prp1968-146 aa
PF24782WD40_MABP1-WDR62_2nd68-132 aa
PF25172Beta-prop_WDR3_2nd68-138 aa
PF24796WDR5568-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G252530PF25175Beta-prop_WDR5611353.9e-1350.1
TkA08G252530PF24817WD40_WDHD1_1st611382.7e-0937.3
TkA08G252530PF25174Beta-prop_THOC3621334.4e-0936.5
TkA08G252530PF23409Beta-prop_EML621330.0001622.0
TkA08G252530PF24814WD40_Prp19681464.5e-1969.3
TkA08G252530PF24782WD40_MABP1-WDR62_2nd681326.2e-1039.3
TkA08G252530PF25172Beta-prop_WDR3_2nd681381.5e-0628.4
TkA08G252530PF24796WDR55681301.8e-0628.0
TkA08G252530PF23414Beta-prop_EML_2681338.8e-0626.0
TkA08G252530PF23383Beta-prop_IFT140_1st681460.0001721.2
TkA08G252530PF23760Beta-prop_DCAF12681330.005616.4
TkA08G252530PF23381Beta-prop_IFT122_1st691351.5e-1144.9
TkA08G252530PF00400WD4069921.6e-1144.9
TkA08G252530PF25168Beta-prop_WDR36-Utp21_2nd691365.9e-0626.5
TkA08G252530PF25391WD40_Gbeta691280.0001821.3
TkA08G252530PF24105Beta-prop_CAF1B_HIR1691370.0006819.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94BR4Arabidopsis thalianasp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 155.500%Swiss-ProtHigh
O22785Arabidopsis thalianasp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 255.100%Swiss-ProtHigh
Q9AV81Oryza sativa subsp. japonicasp|Q9AV81|PRP19_ORYSJ Pre-mRNA-processing factor 1960.500%Swiss-ProtHigh

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