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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G251080
Reference: TK1151 Chr: Chr08 Coordinates: 65574986-65576824 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1839 bp · TkA08G251080|TK1151|cDNA

ATGTTCTTCACAAGGCCATCAGATTTTCCCGCTCCTCGCCACCTTCTCCGATTTCTTCAACTCTCACCCAACAATCAATCTTTGAAACTGACCCAACAAACCCATGCTCGAGTTTGCCACTTAGGTCTCCACCAACATCCAGTTATCGTAACAAATCTCATAAATGCCTACTCCTTTTCCAAGAACACTGTTCAATTTCAAAGGCTGTTCGACTCCATTGAACTCAAGGATGTCTGTTTATGGAACACATTAATCAACGT...

CDS

Download CDS FASTA

1839 bp · TkA08G251080|TK1151|CDS

ATGTTCTTCACAAGGCCATCAGATTTTCCCGCTCCTCGCCACCTTCTCCGATTTCTTCAACTCTCACCCAACAATCAATCTTTGAAACTGACCCAACAAACCCATGCTCGAGTTTGCCACTTAGGTCTCCACCAACATCCAGTTATCGTAACAAATCTCATAAATGCCTACTCCTTTTCCAAGAACACTGTTCAATTTCAAAGGCTGTTCGACTCCATTGAACTCAAGGATGTCTGTTTATGGAACACATTAATCAACGT...

Protein

Download Protein FASTA

612 aa · TkA08G251080|TK1151|PROTEIN

MFFTRPSDFPAPRHLLRFLQLSPNNQSLKLTQQTHARVCHLGLHQHPVIVTNLINAYSFSKNTVQFQRLFDSIELKDVCLWNTLINVFAKNNLHHECFNIFNNMCRSVNSSPDGFTFSTLAKVSGVIEDLPTGEWVHGKSIKHGFLSDTVLTNSLMSMYIKCYSVKPSRKLFDEMPQRTVSSWNIMLSGYINSKNSSTDYKVLELVKHMLTEGLKPNEFTLSNLLPLCGPKSGQFDHGRELHCYTIRNNMNLDIDTGVHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G251080
TK1151 IDTkA08G251080
OH-1004 IDLXL04_033331
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G251080
LocationChr08:65574986-65576824 (-)
DescriptionSimilar to PCMP-H43: Pentatricopeptide repeat-containing protein At3g12770
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15510 Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis.
AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03930.x
Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant.2010 · DOI: 10.1007/s11103-010-9616-5
A point mutation in the pentatricopeptide repeat motif of the AtECB2 protein causes delayed chloroplast development.2011 · DOI: 10.1111/j.1744-7909.2011.01030.x
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033331 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12770
ath:AT5G16860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.679
Rank 1 · TkA08G251080 · TK1151
Plastid0.151
Rank 2 · TkA08G251080 · TK1151
Nucleus0.042
Rank 3 · TkA08G251080 · TK1151
Cytoplasm0.032
Rank 4 · TkA08G251080 · TK1151
Cell membrane0.005
Rank 5 · TkA08G251080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13431TPR_1715-25 aa
PF13041PPR_248-71 aa
PF01535PPR49-73 aa
PF13812PPR_351-90 aa
PF10366Vps39_175-109 aa
PF13041PPR_276-121 aa
PF12854PPR_177-104 aa
PF13812PPR_377-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G251080PF13431TPR_1715250.2112.6
TkA08G251080PF13041PPR_248711.3e-51173.1
TkA08G251080PF01535PPR49731.5e-42141.5
TkA08G251080PF13812PPR_351901.7e-1351.1
TkA08G251080PF10366Vps39_1751090.1513.1
TkA08G251080PF13041PPR_2761211.3e-51173.1
TkA08G251080PF12854PPR_1771044.7e-1968.5
TkA08G251080PF13812PPR_3771231.7e-1351.1
TkA08G251080PF29070MSC6_N771111.2e-1145.1
TkA08G251080PF01535PPR801061.5e-42141.5
TkA08G251080PF17177PPR_long811252.6e-0627.7
TkA08G251080PF23276TPR_24821060.0009819.8
TkA08G251080PF12854PPR_11111204.7e-1968.5
TkA08G251080PF13041PPR_21481801.3e-51173.1
TkA08G251080PF29070MSC6_N1522251.2e-1145.1
TkA08G251080PF01535PPR1531781.5e-42141.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M9E2Arabidopsis thalianasp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic32.800%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic30.300%Swiss-ProtMedium
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070031.000%Swiss-ProtMedium
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151030.200%Swiss-ProtMedium
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935031.500%Swiss-ProtMedium

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