TkA08G247400 | RubberDandelionOmics

Gene overview

TkA08G247400

Reference: TK1151 Chr: Chr08 Coordinates: 64648730-64652185 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1209 bp · TkA08G247400|TK1151|cDNA

ATGAACGCGGCGATAGAAGAAGCAACATCACAAAACATATATAAGGGCATCTCATTACCAAACAACGGACCATTAATTACGCATCTTCAATACGCGGATGATGTCATTCTGTTAGGGGAATGGTCAGTGCTGAATGTCAAATATCTAACAAGAATCCTAAGATGTTTCGAGCTTGCTTCCGGACTCAAAGTAAATTTATCCAAAAGCAACTTGTTTGGGCTCGGCACCACAGATCTAGAAACAGAATTAGCTGCAAGAAG...

CDS

Download CDS FASTA

1209 bp · TkA08G247400|TK1151|CDS

ATGAACGCGGCGATAGAAGAAGCAACATCACAAAACATATATAAGGGCATCTCATTACCAAACAACGGACCATTAATTACGCATCTTCAATACGCGGATGATGTCATTCTGTTAGGGGAATGGTCAGTGCTGAATGTCAAATATCTAACAAGAATCCTAAGATGTTTCGAGCTTGCTTCCGGACTCAAAGTAAATTTATCCAAAAGCAACTTGTTTGGGCTCGGCACCACAGATCTAGAAACAGAATTAGCTGCAAGAAG...

Protein

Download Protein FASTA

402 aa · TkA08G247400|TK1151|PROTEIN

MNAAIEEATSQNIYKGISLPNNGPLITHLQYADDVILLGEWSVLNVKYLTRILRCFELASGLKVNLSKSNLFGLGTTDLETELAARSINCAVGKLPFIYLGLPVGESTARIAQWNNLITKFQAKLSKWKSNTVSFGGRLTMCKSWEKVLYKQEHGGLQIGSLRAQNMALLCKWWWRFKRNGTGLWRLVPRKVNILAWRTSLERLPTKANLAKRGILSCSLCSSADETENHLFLQCPIAKEVLNQLQIWWKSLPQLPSNLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G247400`
TK1151 ID	TkA08G247400
OH-1004 ID	LXL04_032441
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	31.100
Protein coverage (%)	TK1151 82.836 / OH-1004 65.385 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G247400`
Location	Chr08:64648730-64652185 (-)
Description	Similar to Pol: LINE-1 retrotransposable element ORF2 protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032441` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.516

Rank 1 · TkA08G247400 · TK1151

Nucleus0.281

Rank 2 · TkA08G247400 · TK1151

Cell membrane0.184

Rank 3 · TkA08G247400 · TK1151

Endoplasmic reticulum0.046

Rank 4 · TkA08G247400 · TK1151

Golgi apparatus0.040

Rank 5 · TkA08G247400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_121-102 aa

PF13966zf-RVT188-241 aa

PF13966zf-RVT310-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G247400	`PF00078`	RVT_1	21	102	0.017	15.7
TkA08G247400	`PF13966`	zf-RVT	188	241	7.1e-13	49.7
TkA08G247400	`PF13966`	zf-RVT	310	310	7.1e-13	49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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