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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G246910
Reference: TK1151 Chr: Chr08 Coordinates: 64535785-64538274 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1650 bp · TkA08G246910|TK1151|cDNA

ATCGCACTCAACAATATATGTTTTAAAATGTTGTATAATATAACTTTTTAGTATCTAAATCGTTGTGTATGGTCAAAAACTGTCGTGTACATATCTCTATCTAACATAAAACGAAAACACTAAACAGCCGGTCTAGAAACAAAAATGTAAAAACTAAATATTGACCAAAAAAAGCAAGAAACTGAACCAAATGTTTTTCAAATGCAAGAACCAAACTTCACTATTTGGGTTCAATTTATCCCAAAACCGACCCGAACGGC...

CDS

Download CDS FASTA

1071 bp · TkA08G246910|TK1151|CDS

ATGAATCGTATAGAGAATGATCCTGCCGGCGGCGGCTGCGACAATGCTGGGAATGACGAACTTGAGGAGTTTTCAGACGAGTTCAAATGTTGCGTTTGCTTGGATCTCATCTACAAACCAGTTGTATTGGCCTGTGGCCATATCTCATGCTTCTGGTGTGTCTTCGAAGCTATGGATTATTGGCACGAATCTCACTGCCCTGTTTGTCGCCATTCTTATAACCATTTCCCGACCATATGTTGGCTCCTTCACTCCGTTCT...

Protein

Download Protein FASTA

356 aa · TkA08G246910|TK1151|PROTEIN

MNRIENDPAGGGCDNAGNDELEEFSDEFKCCVCLDLIYKPVVLACGHISCFWCVFEAMDYWHESHCPVCRHSYNHFPTICWLLHSVLLKLYPKDYQRRERQVSADEKTNGTSSPQFENPTNPTISNDKTTKNVAVGDLLCTVCKQLIYRPVVLNCGHVFCETCIVDSCDGPCRCPMCQSMHPNGFPKVCLVLEGFLEQNFPEEYCVRKTAVNNRKGVTIPGSTQVPEGGQCSSVSIEEYLSNPGRTKVHFGIGCDFCGMY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G246910
TK1151 IDTkA08G246910
OH-1004 IDLXL04_033262
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 80.726
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G246910
LocationChr08:64535785-64538274 (+)
DescriptionSimilar to PRT1: E3 ubiquitin-protein ligase PRT1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24800 E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins.
PRT1 of Arabidopsis is a ubiquitin protein ligase of the plant N-end rule pathway with specificity for aromatic amino-terminal residues.2003 · DOI: 10.1104/pp.103.029272
PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathway.1998 · DOI: 10.1073/pnas.95.14.7904

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033262 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway Biological Process
GO:0000151 ubiquitin ligase complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT3G24800
hsa:79836
mcf:102135813
mmu:74365
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.703
Rank 1 · TkA08G246910 · TK1151
Cytoplasm0.385
Rank 2 · TkA08G246910 · TK1151
Cell membrane0.053
Rank 3 · TkA08G246910 · TK1151
Endoplasmic reticulum0.032
Rank 4 · TkA08G246910 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA08G246910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04564U-box26-47 aa
PF13920zf-C3HC4_327-74 aa
PF00569ZZ27-33 aa
PF14835zf-RING_628-70 aa
PF13923zf-C3HC4_229-69 aa
PF14634zf-RING_529-71 aa
PF13639zf-RING_229-70 aa
PF16685zf-RING_1029-76 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G246910PF04564U-box26470.1512.9
TkA08G246910PF13920zf-C3HC4_327741e-1042.0
TkA08G246910PF00569ZZ27330.0004620.7
TkA08G246910PF14835zf-RING_628700.1312.9
TkA08G246910PF13923zf-C3HC4_229691.3e-0938.4
TkA08G246910PF14634zf-RING_529710.0001522.4
TkA08G246910PF13639zf-RING_229700.0002422.0
TkA08G246910PF16685zf-RING_1029760.6111.0
TkA08G246910PF13445zf-RING_UBOX30584.3e-0730.6
TkA08G246910PF15227zf-C3HC4_430694.3e-0730.6
TkA08G246910PF00097zf-C3HC430697.8e-0729.6
TkA08G246910PF24921RING_XB3-XBAT3130720.02115.6
TkA08G246910PF14447Prok-RING_430720.1312.9
TkA08G246910PF00569ZZ63710.0004620.7
TkA08G246910PF13445zf-RING_UBOX66774.3e-0730.6
TkA08G246910PF00935Ribosomal_L44981510.6711.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LBL5Arabidopsis thalianasp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT140.700%Swiss-ProtMedium

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