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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G241040
Reference: TK1151 Chr: Chr08 Coordinates: 62872977-62876171 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1897 bp · TkA08G241040|TK1151|cDNA

ATTGTAATAGTATTCTGAAAATAGAAATGATTCATGTAATCCGATTTTTAGAAGTAGATGGGAGGATTAATGAGGATGAGATAGACTTGAAGAGAAGGGGGTTTTCCTTTTTCTTTTACACACAACTGGAAAAGAGATTGAGCTGATTGATATTGCTCTGAATCTGTTGCAGAAACCAAGGAAGAAAAGGATCTTCTCATCAGATTGCAGGAAGACGAGGGTATATCATAGCTCGTGATTCCTAAGATGCCTCCTCACAA...

CDS

Download CDS FASTA

1329 bp · TkA08G241040|TK1151|CDS

ATGCCTCCTCACAACGAAGTTGACCAAATAGACTACATGGCAGAAGAAGGGGACATGTCAGATTTTGCAGATGATGTGGATGCAGATGACAACAATGGTGGAGATAGAAATCTTGATGAATACGATATGCTTACAAAGGTGACGGATACGTCCTCTGCACAAGCAAGGACAGGAAAAGACATTCAGGGAATTCCATGGGAAAGATTGAACATAACAAGAGAAAGTTATAGGCGTACAAGACTTGAACAATACAGAAACTA...

Protein

Download Protein FASTA

442 aa · TkA08G241040|TK1151|PROTEIN

MPPHNEVDQIDYMAEEGDMSDFADDVDADDNNGGDRNLDEYDMLTKVTDTSSAQARTGKDIQGIPWERLNITRESYRRTRLEQYRNYENIPLSGDAVDKKCKQKSKGGNYYEFFHNTRSVKPTILHFQLRNLVWATSKHDVYLMSNYSIMHWSSLSQNLTEILNFSGHVAPTEKHAGSLLEGFTQTQISTLAVSDEFLVAGGFQGELACKRLDKQGVSFCTRTTYEDNAITNAIEIYDTLSGGMHFMASNNDCGVREYDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G241040
TK1151 IDTkA08G241040
OH-1004 IDLXL04_033212
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G241040
LocationChr08:62872977-62876171 (-)
DescriptionSimilar to SPBC2A9.03: Uncharacterized WD repeat-containing protein C2A9.03 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033212 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005829 cytosol Cellular Component
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ana:alr2800
spo:2540276
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.647
Rank 1 · TkA08G241040 · TK1151
Cytoplasm0.469
Rank 2 · TkA08G241040 · TK1151
Lysosome / Vacuole0.037
Rank 3 · TkA08G241040 · TK1151
Mitochondrion0.033
Rank 4 · TkA08G241040 · TK1151
Cell membrane0.031
Rank 5 · TkA08G241040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25168Beta-prop_WDR36-Utp21_2nd60-110 aa
PF23414Beta-prop_EML_2106-138 aa
PF23389Beta-prop_WDR19_1st137-159 aa
PF17005WD40_like148-250 aa
PF24807WD40_CDC20-Fz162-230 aa
PF30552CFAP251_N169-209 aa
PF24805EIF3I184-291 aa
PF20426NBCH_WD40190-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G241040PF25168Beta-prop_WDR36-Utp21_2nd601101.1e-0938.8
TkA08G241040PF23414Beta-prop_EML_21061382.4e-1144.2
TkA08G241040PF23389Beta-prop_WDR19_1st1371590.07512.8
TkA08G241040PF17005WD40_like1482500.01415.5
TkA08G241040PF24807WD40_CDC20-Fz1622301e-0835.6
TkA08G241040PF30552CFAP251_N1692090.001418.5
TkA08G241040PF24805EIF3I1842912.7e-0937.4
TkA08G241040PF20426NBCH_WD401902130.1511.6
TkA08G241040PF25047Beta-prop_TEP1_2nd1932260.001318.7
TkA08G241040PF24796WDR551962695.3e-0626.4
TkA08G241040PF12894ANAPC4_WD402042203.5e-0524.7
TkA08G241040PF06448DUF10812082600.08214.0
TkA08G241040PF24817WD40_WDHD1_1st2423882.2e-1040.9
TkA08G241040PF25174Beta-prop_THOC32434142.2e-1970.2
TkA08G241040PF25168Beta-prop_WDR36-Utp21_2nd2433791.1e-0938.8
TkA08G241040PF23414Beta-prop_EML_22453082.4e-1144.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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