TkA08G240640 | RubberDandelionOmics

Gene overview

TkA08G240640

Reference: TK1151 Chr: Chr08 Coordinates: 62744718-62748117 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2254 bp · TkA08G240640|TK1151|cDNA

TTTTCCCTAAACGAACAAGTGTTGGCATTGTGGTAGGAGAGAAGAAAGCACAACAATTCGAAGCAACCGGATCCCAATCTTCTGATTTTTCATAAAACAATCCCACTCGAACCCTTTCGCAATCCGTCTGCATAATCTTCGTCATCTTGAGAACTTAGGAACTGGATTCTGTGTTTTTCCCCTAAAATTCAGGTTTAAGGTACTGTCCATTTGATTCATTTAGGCGTCGCCAGCTGAATCCGGCTACCCGACAGATATCG...

CDS

Download CDS FASTA

1209 bp · TkA08G240640|TK1151|CDS

ATGACAAACGGGATGATAGAGTGCAGTGTCTGCCATTCCAAGTTGCTATCCACAAAAGCTATCTCAAGGGCTTATGATAGACACCGGAGCAAGGTCTCCAAGAAACACAGGGCACTCAATGTTCTCTTAGTTGTTGGCGACTGTACGTTACTTGGTTTACAGCCAATATTGGTGTATATGTCCAAGGTGGATGGAAAATTCAAATTTAGCCCAATCAGTGTTAACTTCTTAACCGAAATTGCTAAGGTTGTTTTTGCATT...

Protein

Download Protein FASTA

402 aa · TkA08G240640|TK1151|PROTEIN

MTNGMIECSVCHSKLLSTKAISRAYDRHRSKVSKKHRALNVLLVVGDCTLLGLQPILVYMSKVDGKFKFSPISVNFLTEIAKVVFALVMLLIQARNQKVGEPPLLSFSTFLQAARNNMILAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAILLRIIMKRRFSIIQWEALALLLIGISITQMQALPKDSSGIGVPVAMGAYIYTFVFVTVPSLASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLGILGTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G240640`
TK1151 ID	TkA08G240640
OH-1004 ID	LXL04_033201
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G240640

Location Chr08:62744718-62748117 (+)

Description Similar to UTR6: CMP-sialic acid transporter 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59360`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`At2g43240`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0604300`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`UniProt: Q7X7C4`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`UniProt: Q01IU9`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033201 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015739 sialic acid transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015136 sialic acid transmembrane transporter activity Molecular Function

GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G43240

ath:AT3G59360

dosa:Os02g0604300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.626

Rank 1 · TkA08G240640 · TK1151

Endoplasmic reticulum0.185

Rank 2 · TkA08G240640 · TK1151

Cytoplasm0.126

Rank 3 · TkA08G240640 · TK1151

Lysosome / Vacuole0.070

Rank 4 · TkA08G240640 · TK1151

Cell membrane0.068

Rank 5 · TkA08G240640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05077DUF6785-24 aa

PF04142Nuc_sug_transp57-342 aa

PF00892EamA62-186 aa

PF27305MJ130879-89 aa

PF20664DUF681480-92 aa

PF27305MJ1308153-194 aa

PF20664DUF6814172-234 aa

PF00892EamA246-341 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G240640	`PF05077`	DUF678	5	24	0.038	14.9
TkA08G240640	`PF04142`	Nuc_sug_transp	57	342	4.1e-34	118.9
TkA08G240640	`PF00892`	EamA	62	186	0.00044	21.3
TkA08G240640	`PF27305`	MJ1308	79	89	7.1	7.5
TkA08G240640	`PF20664`	DUF6814	80	92	0.34	11.9
TkA08G240640	`PF27305`	MJ1308	153	194	7.1	7.5
TkA08G240640	`PF20664`	DUF6814	172	234	0.34	11.9
TkA08G240640	`PF00892`	EamA	246	341	0.00044	21.3
TkA08G240640	`PF27305`	MJ1308	323	357	7.1	7.5
TkA08G240640	`PF20664`	DUF6814	331	358	0.34	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H6`	Arabidopsis thaliana	sp\|Q9C5H6\|CSTR3_ARATH CMP-sialic acid transporter 3	76.500%	Swiss-Prot	High
`Q8GY97`	Arabidopsis thaliana	sp\|Q8GY97\|CSTR2_ARATH CMP-sialic acid transporter 2	77.600%	Swiss-Prot	High
`Q6K8S7`	Oryza sativa subsp. japonica	sp\|Q6K8S7\|CSTR5_ORYSJ CMP-sialic acid transporter 5	75.400%	Swiss-Prot	High
`Q7X7C4`	Oryza sativa subsp. japonica	sp\|Q7X7C4\|CSTR4_ORYSJ CMP-sialic acid transporter 4	74.600%	Swiss-Prot	High
`Q01IU9`	Oryza sativa subsp. indica	sp\|Q01IU9\|CSTR4_ORYSI CMP-sialic acid transporter 4	74.400%	Swiss-Prot	High

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