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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G237520
Reference: TK1151 Chr: Chr08 Coordinates: 61878356-61883663 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2273 bp · TkA08G237520|TK1151|cDNA

TAGACATGTATAATTGCATTTGCTCTGTTTTTGTGTAATGTTATGTACCACCCCCTACCCATTACACCATCATATCATATGCAATGCTATTTTTCATGGCCCCCATTGCTCTTCACTCCTACCACCTATGATATTACTCCATCATAACGCCGCCTCTACTCCTGATCTCACCACCACACTCACACCCCCATTTTGACGATTTCACCACCACAATTCAAGATTCCACCCCCCCTTTCTTTTCCCCCTTTTGATCTCAGTCC...

CDS

Download CDS FASTA

1332 bp · TkA08G237520|TK1151|CDS

ATGCTCTCACCACCTCCTTCTTCAACACCCTTCAATGGCGTTGACTTTAATGGTCAACAACTCGTTGCAATTCCCATGATTCCAAATCAACAACAGTTGTTCTTCAATCCCCAATCTAATCTAACATGGAGGAACTTTGAAAACGAGTATAATTACCATCCGATGAACGTGCACCATTTCTGCAAGAATCTAGAGAGTCAACCACGGTCAATGCACCACCAATTACCTCCACCTTCGTTGACCCGGTTCATGAACCAAAA...

Protein

Download Protein FASTA

443 aa · TkA08G237520|TK1151|PROTEIN

MLSPPPSSTPFNGVDFNGQQLVAIPMIPNQQQLFFNPQSNLTWRNFENEYNYHPMNVHHFCKNLESQPRSMHHQLPPPSLTRFMNQKGPEKILTRSRGVNPLGSLKFGSFERDDPVSNMVKSDDFGERIYCMAKDQQGCRSLQKKFSEGTREDLEIIFREVIDHVVELMTDPFGNYLVQKLLEVCDNHQHMQILRVITRKPGDLVRISCDMHGTRAVQKVVETLKTREQCSMVVSALKPGIVGLMKNMNGNHVAQRFLQY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G237520
TK1151 IDTkA08G237520
OH-1004 IDLXL04_033177
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 82.495
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G237520
LocationChr08:61878356-61883663 (-)
DescriptionSimilar to APUM12: Pumilio homolog 12
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g56510 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At1g22240 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At1g78160 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At4g08840 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release
At1g35730 Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033177 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006417 regulation of translation Biological Process
GO:0010608 post-transcriptional regulation of gene expression Biological Process
GO:1902039 negative regulation of seed dormancy process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G22240
ath:AT1G35730
ath:AT1G78160
ath:AT4G08840
ath:AT5G56510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.579
Rank 1 · TkA08G237520 · TK1151
Nucleus0.494
Rank 2 · TkA08G237520 · TK1151
Cell membrane0.104
Rank 3 · TkA08G237520 · TK1151
Endoplasmic reticulum0.044
Rank 4 · TkA08G237520 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA08G237520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00806PUF129-162 aa
PF22493PUF_NOP9132-187 aa
PF19075DUF5771140-161 aa
PF08144CPL158-204 aa
PF00806PUF164-198 aa
PF17830STI1-HOP_DP179-192 aa
PF00806PUF205-236 aa
PF22493PUF_NOP9210-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G237520PF00806PUF1291621.9e-72238.8
TkA08G237520PF22493PUF_NOP91321875.4e-1969.2
TkA08G237520PF19075DUF57711401610.2812.2
TkA08G237520PF08144CPL1582043.7e-0524.8
TkA08G237520PF00806PUF1641981.9e-72238.8
TkA08G237520PF17830STI1-HOP_DP1791920.1213.1
TkA08G237520PF00806PUF2052361.9e-72238.8
TkA08G237520PF22493PUF_NOP92102645.4e-1969.2
TkA08G237520PF19075DUF57712152370.2812.2
TkA08G237520PF00806PUF2412711.9e-72238.8
TkA08G237520PF08144CPL2643093.7e-0524.8
TkA08G237520PF00806PUF2763101.9e-72238.8
TkA08G237520PF22493PUF_NOP92783325.4e-1969.2
TkA08G237520PF00806PUF3153321.9e-72238.8
TkA08G237520PF08144CPL3393833.7e-0524.8
TkA08G237520PF22493PUF_NOP93403845.4e-1969.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVC3Arabidopsis thalianasp|Q9LVC3|PUM12_ARATH Pumilio homolog 1258.800%Swiss-ProtHigh
Q9LM20Arabidopsis thalianasp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic51.000%Swiss-ProtHigh
Q9C9R6Arabidopsis thalianasp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic54.600%Swiss-ProtHigh
Q9LDW3Arabidopsis thalianasp|Q9LDW3|PUM11_ARATH Pumilio homolog 1149.400%Swiss-ProtMedium
Q1PFN9Arabidopsis thalianasp|Q1PFN9|PUM9_ARATH Pumilio homolog 948.500%Swiss-ProtMedium

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