TkA08G227370 | RubberDandelionOmics

Gene overview

TkA08G227370

Reference: TK1151 Chr: Chr08 Coordinates: 59215567-59217586 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1065 bp · TkA08G227370|TK1151|cDNA

CTTATACAAACACCTGAAAAGCTTTCACACAACCGCAAAGAAATGGATAACAGAAACATACGATTTTCTTCAATCTTAATTTTGCTTATCATCATCTTTTGTGCACCTTTTTCTATCGCTCAAGAAGTTGATGATGAAAGTGAGTTCACGTACGATGTGAATAGTCCAAACGGGCCGGATCATTGGGGAGAGATCCATCCCGATTGGGGCATGTGTAACCAAGGAGACTTGCAGTCTCCTATTGATCTCACACACAAGAG...

CDS

Download CDS FASTA

825 bp · TkA08G227370|TK1151|CDS

ATGGATAACAGAAACATACGATTTTCTTCAATCTTAATTTTGCTTATCATCATCTTTTGTGCACCTTTTTCTATCGCTCAAGAAGTTGATGATGAAAGTGAGTTCACGTACGATGTGAATAGTCCAAACGGGCCGGATCATTGGGGAGAGATCCATCCCGATTGGGGCATGTGTAACCAAGGAGACTTGCAGTCTCCTATTGATCTCACACACAAGAGGGTTCATACGACTTCGAGTATTGGAAGACTTGACAGAGATTA...

Protein

Download Protein FASTA

274 aa · TkA08G227370|TK1151|PROTEIN

MDNRNIRFSSILILLIIIFCAPFSIAQEVDDESEFTYDVNSPNGPDHWGEIHPDWGMCNQGDLQSPIDLTHKRVHTTSSIGRLDRDYKPANSTLVNRGHDMMLRWVGGAGHIHINGTEYQLNQLHWHTPSEHTINGRRFNLEVHMVHQSTDGKIAVVGIMYKTGRPDSLLSMMEPYFKALSSTRDVEKSVGIIDPREIKLGSRKYYRYIGSLTTPPCTQNVIWTIVKKVRTISREQMHAIREAVHDDAEANSRPIQPLNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G227370`
TK1151 ID	TkA08G227370
OH-1004 ID	LXL04_033046
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G227370

Location Chr08:59215567-59217586 (+)

Description Similar to ACA7: Alpha carbonic anhydrase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08080`	Reversible hydration of carbon dioxide.	No verified direct reference in this release
`At2g28210`	Reversible hydration of carbon dioxide.	No verified direct reference in this release
`At1g08065`	Reversible hydration of carbon dioxide.	No verified direct reference in this release
`At4g20990`	Reversible hydration of carbon dioxide.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033046 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000305 response to oxygen radical Biological Process

GO:0006730 one-carbon metabolic process Biological Process

GO:0006885 regulation of pH Biological Process

GO:0010037 response to carbon dioxide Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0016020 membrane Cellular Component

GO:0098572 stromal side of plastid thylakoid membrane Cellular Component

GO:0004089 carbonate dehydratase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08065

ath:AT1G08080

ath:AT4G20990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.459

Rank 1 · TkA08G227370 · TK1151

Lysosome / Vacuole0.141

Rank 2 · TkA08G227370 · TK1151

Cytoplasm0.104

Rank 3 · TkA08G227370 · TK1151

Endoplasmic reticulum0.098

Rank 4 · TkA08G227370 · TK1151

Cell membrane0.087

Rank 5 · TkA08G227370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00194Carb_anhydrase43-263 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G227370	`PF00194`	Carb_anhydrase	43	263	4.6e-43	148.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L817`	Arabidopsis thaliana	sp\|Q8L817\|ATCA7_ARATH Alpha carbonic anhydrase 7	53.300%	Swiss-Prot	High
`F4IHR4`	Arabidopsis thaliana	sp\|F4IHR4\|ATCA2_ARATH Alpha carbonic anhydrase 2	60.200%	Swiss-Prot	High
`F4HUC4`	Arabidopsis thaliana	sp\|F4HUC4\|ATCA5_ARATH Alpha carbonic anhydrase 5	51.000%	Swiss-Prot	High
`F4JIK2`	Arabidopsis thaliana	sp\|F4JIK2\|ATCA4_ARATH Alpha carbonic anhydrase 4	50.800%	Swiss-Prot	High

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