TkA08G219210 | RubberDandelionOmics

Gene overview

TkA08G219210

Reference: TK1151 Chr: Chr08 Coordinates: 57290392-57291503 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

999 bp · TkA08G219210|TK1151|cDNA

GTAACCATAAGGCCATCACTCCCCGATATAAACAACCCGTCATCCATGCCCACGCCGTGACTCGTTTTAACTTTTAACCCAGTTTCTTGAATTTCCGACGAACGCAATGCCGACTATCGTTGACCGTATAGCCGTCGGCCGGTACCAAGATGAGGTGCAACACCCCAGCGCCATCAAGGCGTTCGTGGCGGAGTTCATAAGCACCCTCATCTTCGTGTTCGCCGGACAAGGCTCCGGAATGGCTTTCACCAAGCTCACCC...

CDS

Download CDS FASTA

765 bp · TkA08G219210|TK1151|CDS

ATGCCGACTATCGTTGACCGTATAGCCGTCGGCCGGTACCAAGATGAGGTGCAACACCCCAGCGCCATCAAGGCGTTCGTGGCGGAGTTCATAAGCACCCTCATCTTCGTGTTCGCCGGACAAGGCTCCGGAATGGCTTTCACCAAGCTCACCCATGGTGCTGCAAACACTCCCTCTGGTCTAGTAGCGGCGGCACTAGCTCATGCTTTTGGACTGTTCGTCGCCGTGTCCGTCGGAGCTAATATCTCCGGCGGCCATGT...

Protein

Download Protein FASTA

254 aa · TkA08G219210|TK1151|PROTEIN

MPTIVDRIAVGRYQDEVQHPSAIKAFVAEFISTLIFVFAGQGSGMAFTKLTHGAANTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGICYIIAQLLGSTVACLLLLFSTGGLTTAGFALGAEVSVWNGFVFEIVMTFGLVYTVYATAVDPKKGDVGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPAVVSWDWTNHWVYWAGPIIGGGLAGLVYELLFIGRSHEPLPASDY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G219210`
TK1151 ID	TkA08G219210
OH-1004 ID	LXL04_032625
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	78.400
Protein coverage (%)	TK1151 96.457 / OH-1004 97.600 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G219210

Location Chr08:57290392-57291503 (+)

Description Similar to TIP1-1: Aquaporin TIP1-1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36830`	Water channel required to facilitate the transport of water, diffusion of amino acids and/or peptides from the vacuolar compartment to the cytoplasm.	No verified direct reference in this release
`At3g26520`	Water channel required to facilitate the transport of water across cell membrane.	Characterization of two new channel protein genes in Arabidopsis.1999 · DOI: 10.1016/s1016-8478(23)13513-8 Urea transport by nitrogen-regulated tonoplast intrinsic proteins in Arabidopsis.2003 · DOI: 10.1104/pp.103.027409

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0146100`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032625 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0015840 urea transport Biological Process

GO:0080170 hydrogen peroxide transmembrane transport Biological Process

GO:1902074 response to salt Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000326 protein storage vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT2G36830

ath:AT3G26520

dosa:Os03g0146100

mtr:25499345

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.533

Rank 1 · TkA08G219210 · TK1151

Cell membrane0.277

Rank 2 · TkA08G219210 · TK1151

Endoplasmic reticulum0.115

Rank 3 · TkA08G219210 · TK1151

Cytoplasm0.092

Rank 4 · TkA08G219210 · TK1151

Golgi apparatus0.057

Rank 5 · TkA08G219210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230MIP16-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G219210	`PF00230`	MIP	16	237	6.1e-78	262.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P25818`	Arabidopsis thaliana	sp\|P25818\|TIP11_ARATH Aquaporin TIP1-1	77.600%	Swiss-Prot	High
`Q41963`	Arabidopsis thaliana	sp\|Q41963\|TIP12_ARATH Aquaporin TIP1-2	75.300%	Swiss-Prot	High
`P50156`	Oryza sativa subsp. japonica	sp\|P50156\|TIP11_ORYSJ Probable aquaporin TIP1-1	77.200%	Swiss-Prot	High

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