TkA08G218560 | RubberDandelionOmics

Gene overview

TkA08G218560

Reference: TK1151 Chr: Chr08 Coordinates: 57113886-57116242 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2023 bp · TkA08G218560|TK1151|cDNA

GTTTATATAGCCCCTCTTATTAAATAATTCTGGCTCCGCCCTGCTCGATATATATGTGTTCGTGGAAATATATGCCTTGTTGGTCAATTTGGCTCCTTGCCATAATCGAAATTTTAAACTTGCACGCAAAGTTTTAGTCGTTAACCTACAAAACGCATACACTCTGCACCACTGAATCAATAAACAACAAGAATAGTCTTCAAAACAAATAAAAATGGCTTCTTTACTATTCCCAACGCCACCAGCAACTACCATCACCA...

CDS

Download CDS FASTA

1617 bp · TkA08G218560|TK1151|CDS

ATGGCTTCTTTACTATTCCCAACGCCACCAGCAACTACCATCACCAACAGTCGCTTACTTCCTTCACTTCATCTTCACCACACAAAATCCATAAATCTCCGTTCTCACCCATCACCACCACCCTCATCTCGCCGAAAAAAGCTCCTCCCTCCACTCCGGGTAGCTGCCCCACCATCCCCCTCCACCACCGACGCTTCCATTGATCCTGAAATCGAAGAATCCGAAGCAAGTTCTTCATCGAAATTCTCATGGAGAGATCA...

Protein

Download Protein FASTA

538 aa · TkA08G218560|TK1151|PROTEIN

MASLLFPTPPATTITNSRLLPSLHLHHTKSINLRSHPSPPPSSRRKKLLPPLRVAAPPSPSTTDASIDPEIEESEASSSSKFSWRDHWYPISLIEDLDPNIPTPFTLLNRDLVIWFDKTNNQWAAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCSRIPQASSEGPEARAVQSPRACATRFPTMVSQGLLFVWPDENGLERARATQPPMLPDDFENPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G218560`
TK1151 ID	TkA08G218560
OH-1004 ID	LXL04_032989
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G218560

Location Chr08:57113886-57116242 (+)

Description Similar to PAO: Pheophorbide a oxygenase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44880`	Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC).	No verified direct reference in this release
`At4g25650`	Part of a translocon most abundantly expressed in etiolated plants and involved in the protochlorophyllide-dependent import of the precursor NADPH:protochlorophyllide oxidoreductase A (pPORA).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0146400`	Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032989 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009812 flavonoid metabolic process Biological Process

GO:0009908 flower development Biological Process

GO:0010154 fruit development Biological Process

GO:0012501 programmed cell death Biological Process

GO:0015031 protein transport Biological Process

GO:0015996 chlorophyll catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

KEGG gene cross-reference

ath:AT3G44880

ath:AT4G25650

osa:4331611

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.965

Rank 1 · TkA08G218560 · TK1151

Mitochondrion0.043

Rank 2 · TkA08G218560 · TK1151

Nucleus0.018

Rank 3 · TkA08G218560 · TK1151

Cytoplasm0.017

Rank 4 · TkA08G218560 · TK1151

Cell membrane0.011

Rank 5 · TkA08G218560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00355Rieske87-170 aa

PF19112VanA_C240-272 aa

PF19112VanA_C292-359 aa

PF08417PaO296-389 aa

PF08709Ins145_P3_rec355-382 aa

PF08417PaO417-439 aa

PF16278zf-C2HE425-481 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G218560	`PF00355`	Rieske	87	170	5.1e-23	81.5
TkA08G218560	`PF19112`	VanA_C	240	272	1.6e-06	29.1
TkA08G218560	`PF19112`	VanA_C	292	359	1.6e-06	29.1
TkA08G218560	`PF08417`	PaO	296	389	4.7e-19	69.0
TkA08G218560	`PF08709`	Ins145_P3_rec	355	382	0.3	10.9
TkA08G218560	`PF08417`	PaO	417	439	4.7e-19	69.0
TkA08G218560	`PF16278`	zf-C2HE	425	481	0.067	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FYC2`	Arabidopsis thaliana	sp\|Q9FYC2\|PAO_ARATH Pheophorbide a oxygenase, chloroplastic	73.400%	Swiss-Prot	High
`Q8W496`	Arabidopsis thaliana	sp\|Q8W496\|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic	31.900%	Swiss-Prot	Medium
`Q0DV66`	Oryza sativa subsp. japonica	sp\|Q0DV66\|PAO_ORYSJ Pheophorbide a oxygenase, chloroplastic	73.300%	Swiss-Prot	High

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