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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G216060
Reference: TK1151 Chr: Chr08 Coordinates: 56534143-56536719 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1623 bp · TkA08G216060|TK1151|cDNA

CGGGCGCATCGGAGGAGCTAGGGAGAGAGATGGAGAGTAACAGTTGCAGAAACAATGGAGTTCCGAACACGAACAAGGAAGAACGCCCTAAAATTGAGAATTCCAAGCCAAAAGTAGTGGTGATAATGGGAGCAACAGGTTCCGGAAAATCCCGTCTCGCCATTGACTTAGCTGCACACTTCGCTATTGAAATCATCAACGCCGATTCCATGCAGGTGTACAGAGGGTTGGGTGTTCTCACTAATAAAGTTCCACTTGAC...

CDS

Download CDS FASTA

1407 bp · TkA08G216060|TK1151|CDS

ATGGAGAGTAACAGTTGCAGAAACAATGGAGTTCCGAACACGAACAAGGAAGAACGCCCTAAAATTGAGAATTCCAAGCCAAAAGTAGTGGTGATAATGGGAGCAACAGGTTCCGGAAAATCCCGTCTCGCCATTGACTTAGCTGCACACTTCGCTATTGAAATCATCAACGCCGATTCCATGCAGGTGTACAGAGGGTTGGGTGTTCTCACTAATAAAGTTCCACTTGACGATCAAAAAGGAGTGCCACACCATCTCTT...

Protein

Download Protein FASTA

468 aa · TkA08G216060|TK1151|PROTEIN

MESNSCRNNGVPNTNKEERPKIENSKPKVVVIMGATGSGKSRLAIDLAAHFAIEIINADSMQVYRGLGVLTNKVPLDDQKGVPHHLLGTTSPMVEFTAKDFRDSAIPLINDITSRNHLPVIVGGTNYYIQALVSRFLLDDSPVDTDELNLDEAYGDKQQANELMQEEENFNYSYDNLKDIDPIAANRIHPNDHRKINQYLHLYTSSGVLPSKYLQEKTMENWGNGDNLRYNCCFICVDASLPIIDNYVDQRVDQMVNSGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G216060
TK1151 IDTkA08G216060
OH-1004 IDLXL04_032959
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G216060
LocationChr08:56534143-56536719 (+)
DescriptionSimilar to IPT2: tRNA dimethylallyltransferase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27760 May transfer a dimethylallyl group to tRNA adenosine 37 to form N6-isopentenyladenosine (i⁶A).
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis.2006 · DOI: 10.1073/pnas.0603522103
At5g19040 Involved in cytokinin biosynthesis. No verified direct reference in this release
At3g23630 Involved in cytokinin biosynthesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032959 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006400 tRNA modification Biological Process
GO:0009691 cytokinin biosynthetic process Biological Process
GO:0070900 mitochondrial tRNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0009824 AMP dimethylallyltransferase activity Molecular Function
GO:0052381 tRNA dimethylallyltransferase activity Molecular Function
KEGG gene cross-reference
afl:Aflv_1518
ath:AT2G27760
gtn:GTNG_1167
hsa:54802
mmu:66966
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.427
Rank 1 · TkA08G216060 · TK1151
Mitochondrion0.294
Rank 2 · TkA08G216060 · TK1151
Nucleus0.236
Rank 3 · TkA08G216060 · TK1151
Plastid0.072
Rank 4 · TkA08G216060 · TK1151
Peroxisome0.062
Rank 5 · TkA08G216060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06414Zeta_toxin21-51 aa
PF25199nSTAND_NTPase522-41 aa
PF13191AAA_1625-50 aa
PF20720nSTAND326-53 aa
PF02562PhoH26-51 aa
PF01745IPT28-69 aa
PF13481AAA_2528-52 aa
PF13671AAA_3329-61 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G216060PF06414Zeta_toxin21510.007716.4
TkA08G216060PF25199nSTAND_NTPase522410.1312.8
TkA08G216060PF13191AAA_1625500.1613.2
TkA08G216060PF20720nSTAND326530.007716.6
TkA08G216060PF02562PhoH26510.1812.0
TkA08G216060PF01745IPT28699.4e-0522.6
TkA08G216060PF13481AAA_2528520.006416.9
TkA08G216060PF13671AAA_3329610.02415.6
TkA08G216060PF13521AAA_2830560.02115.7
TkA08G216060PF00910RNA_helicase30590.04115.1
TkA08G216060PF30694AAA_RNF213_330680.1612.9
TkA08G216060PF02224Cytidylate_kin32800.1512.5
TkA08G216060PF01715IPPT623472.3e-53182.1
TkA08G216060PF30694AAA_RNF213_31141560.1612.9
TkA08G216060PF01433Peptidase_M11601840.1612.3
TkA08G216060PF01433Peptidase_M12142230.1612.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUX7Arabidopsis thalianasp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 258.000%Swiss-ProtHigh
Q94ID2Arabidopsis thalianasp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic33.800%Swiss-ProtMedium
Q94ID1Arabidopsis thalianasp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial31.900%Swiss-ProtMedium

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