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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G212950
Reference: TK1151 Chr: Chr08 Coordinates: 55709814-55713551 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1704 bp · TkA08G212950|TK1151|cDNA

TGCACAGGAATTTAAAATTTCAAATATGGCATTGATTCTTTCTCCCGGCGGTCTATCAGTATATGCCACGTGTAAACATCCGACTGCTAGAGCTCAAGATAGTATGTGACAAGCATCCCTATCTGATTATACACTTCTTCCTATATATATCCAAATTCGACACCCGATTTCTTCGTGAAGCTTTTTCCCTCTTTCTCAAATCAACCAATTTCTCCTGAAAATCAATAAATTTCAATTTCAATTTCAATTTCCCAAAACCA...

CDS

Download CDS FASTA

1050 bp · TkA08G212950|TK1151|CDS

ATGAAATCACATCAGAATTTCACTGAACTGATCCCAGGTTTACCTGAAGAAATTGCCCTCGAGTGCTTGACTCGTTTGCATTATGGAGCTCACGCCATCGCCTCCCATGTCTGTCAACGCTGGCGTAACCTTCTACAGAGCCGGGAACTCTATTACCACCGGAAAAGAAGTGGGTTCACCCGGAAAGCTGCTTGTTTTGTCCAATCGCTTCCGATTCACTCTGAATCGTGTTCCTCAAATGTTAAACCCGAAAAACAGCC...

Protein

Download Protein FASTA

349 aa · TkA08G212950|TK1151|PROTEIN

MKSHQNFTELIPGLPEEIALECLTRLHYGAHAIASHVCQRWRNLLQSRELYYHRKRSGFTRKAACFVQSLPIHSESCSSNVKPEKQPKYGLSIFHPITGIWDQIDPVPKYPEGLPLFCQVASSEGKLVVMGGWNSVSWEPLRDVFVYEFTTRKWTQRVNMPSTRSFFATGASDGKVYVAGGHDENKNALRSAWVYDIAADEWTELTPMSEERDECEGVFVGSQFWVVSGYETDSQGRFKNSAEVLDTTTGTWRRVEEAWG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G212950
TK1151 IDTkA08G212950
OH-1004 IDLXL04_032907
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G212950
LocationChr08:55709814-55713551 (-)
DescriptionSimilar to At2g44130: F-box/kelch-repeat protein At2g44130
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g44130 F-box/kelch-repeat protein At2g44130. No verified direct reference in this release
At1g15670 F-box/kelch-repeat protein At1g15670. No verified direct reference in this release
At3g59940 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At1g30090 F-box/kelch-repeat protein At1g30090. No verified direct reference in this release
At1g67480 F-box/kelch-repeat protein At1g67480. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032907 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009611 response to wounding Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0080037 negative regulation of cytokinin-activated signaling pathway Biological Process
GO:2000762 regulation of phenylpropanoid metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
ath:AT1G15670
ath:AT1G16250
ath:AT1G80440
ath:AT2G44130
ath:AT3G59940
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.618
Rank 1 · TkA08G212950 · TK1151
Cytoplasm0.419
Rank 2 · TkA08G212950 · TK1151
Mitochondrion0.051
Rank 3 · TkA08G212950 · TK1151
Cell membrane0.047
Rank 4 · TkA08G212950 · TK1151
Endoplasmic reticulum0.043
Rank 5 · TkA08G212950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box12-51 aa
PF12937F-box-like12-54 aa
PF25210Kelch_FKB9585-140 aa
PF24681Kelch_KLHDC2_KLHL20_DRC791-269 aa
PF13964Beta-prop_Calicin92-109 aa
PF01344Kelch_193-104 aa
PF13415Beta-prop_FBX42100-252 aa
PF22472Ago_N_2104-155 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G212950PF00646F-box12513.3e-0627.5
TkA08G212950PF12937F-box-like12540.000122.7
TkA08G212950PF25210Kelch_FKB95851401.2e-1765.1
TkA08G212950PF24681Kelch_KLHDC2_KLHL20_DRC7912699.5e-1865.0
TkA08G212950PF13964Beta-prop_Calicin921098.3e-1245.4
TkA08G212950PF01344Kelch_1931042.3e-2898.0
TkA08G212950PF13415Beta-prop_FBX421002527.1e-1246.1
TkA08G212950PF22472Ago_N_21041550.04115.0
TkA08G212950PF24996NANM1061820.0004719.8
TkA08G212950PF25210Kelch_FKB951072111.2e-1765.1
TkA08G212950PF01344Kelch_11181612.3e-2898.0
TkA08G212950PF07646Kelch_21201562.8e-1246.6
TkA08G212950PF13418Beta-prop_TYW41242104.4e-0524.2
TkA08G212950PF13964Beta-prop_Calicin1282558.3e-1245.4
TkA08G212950PF24981Beta-prop_ATRN-LZTR11292576.1e-1039.5
TkA08G212950PF24996NANM1522070.0004719.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80582Arabidopsis thalianasp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g4413040.700%Swiss-ProtMedium
Q9LMR5Arabidopsis thalianasp|Q9LMR5|FK126_ARATH F-box/kelch-repeat protein At1g1567035.500%Swiss-ProtMedium
Q9M1Y1Arabidopsis thalianasp|Q9M1Y1|SKI20_ARATH F-box/kelch-repeat protein SKIP2037.300%Swiss-ProtMedium
Q9C6Z0Arabidopsis thalianasp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g3009026.900%Swiss-ProtLow
Q9CAG8Arabidopsis thalianasp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g6748024.200%Swiss-ProtLow

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