TkA08G209130 | RubberDandelionOmics

Gene overview

TkA08G209130

Reference: TK1151 Chr: Chr08 Coordinates: 54685854-54691570 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

648 bp · TkA08G209130|TK1151|cDNA

ATTAATAACCGGGTACGCGGTATTGGCGAGTGTTGTGCAAAGCTTTTTGCTGAACATGGAGCGAAAGTTGTAGTCGCAGACATTGAAGACCAACTTGGCCAAGCAGTTTGTGAGTCAATAGGCTCATCAAACTCAATATACGTCCACTGCGATATCACCAATGAAGAAGATGTCAAAAACGTTATAGACACTGCAGTCGCCACTTATGGAAAGAAGCACGCCGCTAGAGTTATGGTCCCACGAAAAGCGGGCTCTATAAT...

CDS

Download CDS FASTA

648 bp · TkA08G209130|TK1151|CDS

ATTAATAACCGGGTACGCGGTATTGGCGAGTGTTGTGCAAAGCTTTTTGCTGAACATGGAGCGAAAGTTGTAGTCGCAGACATTGAAGACCAACTTGGCCAAGCAGTTTGTGAGTCAATAGGCTCATCAAACTCAATATACGTCCACTGCGATATCACCAATGAAGAAGATGTCAAAAACGTTATAGACACTGCAGTCGCCACTTATGGAAAGAAGCACGCCGCTAGAGTTATGGTCCCACGAAAAGCGGGCTCTATAAT...

Protein

Download Protein FASTA

215 aa · TkA08G209130|TK1151|PROTEIN

INNRVRGIGECCAKLFAEHGAKVVVADIEDQLGQAVCESIGSSNSIYVHCDITNEEDVKNVIDTAVATYGKKHAARVMVPRKAGSIISASSLTSHLGGMATHAYLCSKHAMVGLTRNLAVELGQFGIRVNCVSPFGIATSMSTDFIGIEREVIEHLMNGVANLKGVTHKAEDVAYAALYLASDEAKYVSGQNMHVDGGLSYANDSFKMFKYPEEP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G209130`
TK1151 ID	TkA08G209130
OH-1004 ID	LXL04_032854
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.500
Protein coverage (%)	TK1151 99.535 / OH-1004 94.444 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G209130

Location Chr08:54685854-54691570 (-)

Description Similar to Secoisolariciresinol dehydrogenase (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0179200`	Involved in momilactone phytoalexins biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032854 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009807 lignan biosynthetic process Biological Process

GO:0016114 terpenoid biosynthetic process Biological Process

GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0102960 momilactone-A synthase [NAD(P)H] activity Molecular Function

GO:0120529 secoisolariciresinol dehydrogenase activity Molecular Function

KEGG gene cross-reference

dosa:Os04g0179200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.724

Rank 1 · TkA08G209130 · TK1151

Nucleus0.259

Rank 2 · TkA08G209130 · TK1151

Peroxisome0.115

Rank 3 · TkA08G209130 · TK1151

Mitochondrion0.055

Rank 4 · TkA08G209130 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkA08G209130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26483DUF8155_C3-37 aa

PF13561adh_short_C26-71 aa

PF00106adh_short6-71 aa

PF03435Sacchrp_dh_NADP7-62 aa

PF027373HCDH_N8-65 aa

PF13561adh_short_C272-200 aa

PF00106adh_short72-143 aa

PF027373HCDH_N150-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G209130	`PF26483`	DUF8155_C	3	37	0.078	13.8
TkA08G209130	`PF13561`	adh_short_C2	6	71	2.2e-45	155.8
TkA08G209130	`PF00106`	adh_short	6	71	5.4e-28	98.5
TkA08G209130	`PF03435`	Sacchrp_dh_NADP	7	62	0.026	15.6
TkA08G209130	`PF02737`	3HCDH_N	8	65	0.063	13.9
TkA08G209130	`PF13561`	adh_short_C2	72	200	2.2e-45	155.8
TkA08G209130	`PF00106`	adh_short	72	143	5.4e-28	98.5
TkA08G209130	`PF02737`	3HCDH_N	150	164	0.063	13.9
TkA08G209130	`PF26483`	DUF8155_C	160	201	0.078	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7FAE1`	Oryza sativa subsp. japonica	sp\|Q7FAE1\|MOMAS_ORYSJ Momilactone A synthase	47.600%	Swiss-Prot	Medium

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