Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1973 bp · TkA08G198470|TK1151|cDNA
TTAGTGTACATATTGCGAATGATATATAGTTTAGGGCTATATCTGCAATATAGAATAACTAAACCTATTTTCTCATTTCTTCTCAGAGGTTTATGGTTCTTTGTCTGTTAAACCCTAGTTTCGTGGCGGTCCAAGGGAATTTGTTGATCGTTGCGTGGGGAATTTGATAAACCGAAAGAAATTAGAGTGAAAAATGACGGATAAAGATCCTTCTTTTCTTTTCTCAGGAATCACATTCAACCGGAAGAAGTTCTCCGGTG...
1596 bp · TkA08G198470|TK1151|CDS
ATGACGGATAAAGATCCTTCTTTTCTTTTCTCAGGAATCACATTCAACCGGAAGAAGTTCTCCGGTGATTTTGCTCGGTTCAAGGAAAAAAAGGAAATCAATGATTCCGAAGAGACATTGCTTGAAAACATAATCCCTGAGGTGGAGGTGGCTGCAAAACCTGTCAAAAAGAGGAAGAGGAAGGCATCCGTTTCAGACCCTGTAGAAGGATTTAACGTTTTCAAGAACTCAAAGACCAAGCCAGTACTTGAAGAAAATGA...
Protein
Download Protein FASTA531 aa · TkA08G198470|TK1151|PROTEIN
MTDKDPSFLFSGITFNRKKFSGDFARFKEKKEINDSEETLLENIIPEVEVAAKPVKKRKRKASVSDPVEGFNVFKNSKTKPVLEENEESETASQGKKELYRQMERDAIFRKQHNIHTSGTNISSPLHDFSELRSRYKCKPYILRNLAELGIKEPTPIQMQAIPILLSGRECFACAPTGSGKTLAFVVPMLMKLKKASKDGIRAVILCPTRELASQTFRECKKIAKGKKFYIKLMTKQLANTGEFSKLPCDILISTPLRLK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G198470 |
|---|---|
| TK1151 ID | TkA08G198470 |
| OH-1004 ID | LXL04_032695 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G198470 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:51757520-51760709 (+) | ||||||||||||
| Description | Similar to RH57: DEAD-box ATP-dependent RNA helicase 57 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0030490 maturation of SSU-rRNA Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function GO:0003724 RNA helicase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008186 ATP-dependent activity, acting on RNA Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT3G09720 bta:510826 ddi:DDB_G0274325 dha:DEHA2E16632g dosa:Os07g0647900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15236CCDC6616-64 aaPF15236CCDC6682-108 aaPF04851ResIII154-287 aaPF00270DEAD155-321 aaPF02534T4SS-DNA_transf173-219 aaPF00271Helicase_C196-255 aaPF22916UTP25_NTPase-like203-228 aaPF10668Phage_terminase208-225 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G198470 | PF15236 | CCDC66 | 16 | 64 | 1.4 | 9.4 |
| TkA08G198470 | PF15236 | CCDC66 | 82 | 108 | 1.4 | 9.4 |
| TkA08G198470 | PF04851 | ResIII | 154 | 287 | 9.7e-10 | 39.3 |
| TkA08G198470 | PF00270 | DEAD | 155 | 321 | 1.6e-39 | 136.0 |
| TkA08G198470 | PF02534 | T4SS-DNA_transf | 173 | 219 | 0.022 | 14.4 |
| TkA08G198470 | PF00271 | Helicase_C | 196 | 255 | 8.2e-32 | 110.4 |
| TkA08G198470 | PF22916 | UTP25_NTPase-like | 203 | 228 | 0.18 | 12.0 |
| TkA08G198470 | PF10668 | Phage_terminase | 208 | 225 | 0.4 | 11.1 |
| TkA08G198470 | PF22916 | UTP25_NTPase-like | 231 | 284 | 0.18 | 12.0 |
| TkA08G198470 | PF06214 | SLAM | 302 | 357 | 0.049 | 14.4 |
| TkA08G198470 | PF03693 | ParD_antitoxin | 332 | 367 | 0.0086 | 17.2 |
| TkA08G198470 | PF00271 | Helicase_C | 357 | 465 | 8.2e-32 | 110.4 |
| TkA08G198470 | PF21090 | P-loop_SecA | 357 | 437 | 0.18 | 12.1 |
| TkA08G198470 | PF00270 | DEAD | 367 | 407 | 1.6e-39 | 136.0 |
| TkA08G198470 | PF22590 | Cas3-like_C_2 | 373 | 464 | 0.017 | 16.1 |
| TkA08G198470 | PF10668 | Phage_terminase | 379 | 389 | 0.4 | 11.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.