TkA08G188420 | RubberDandelionOmics

Gene overview

TkA08G188420

Reference: TK1151 Chr: Chr08 Coordinates: 49228938-49230684 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1608 bp · TkA08G188420|TK1151|cDNA

TTTCCGGCGTTGTTCCTCCTTCTCGCCTTTCTATCTCATCCCATCTCCGCCGCAGTTTCCGCCCAAGAGCTACTCAAAGGATTCACCGCCACCCCTGATTCATCCGTATCATCATTCCAACCTCTACTCAGTGACCCAGTTGGTAACTACTCGTTGGGTTTCCTCCGAGTTGATCGAACTCAACTCTCCCTTGCCGTCATCCATGTCCCGTCCCAGGAGCAGCTTTGGATCGCCGGAAAAAGCCCTCTCGCGCGGTGGTC...

CDS

Download CDS FASTA

1203 bp · TkA08G188420|TK1151|CDS

TTTCCGGCGTTGTTCCTCCTTCTCGCCTTTCTATCTCATCCCATCTCCGCCGCAGTTTCCGCCCAAGAGCTACTCAAAGGATTCACCGCCACCCCTGATTCATCCGTATCATCATTCCAACCTCTACTCAGTGACCCAGTTGGTAACTACTCGTTGGGTTTCCTCCGAGTTGATCGAACTCAACTCTCCCTTGCCGTCATCCATGTCCCGTCCCAGGAGCAGCTTTGGATCGCCGGAAAAAGCCCTCTCGCGCGGTGGTC...

Protein

Download Protein FASTA

400 aa · TkA08G188420|TK1151|PROTEIN

FPALFLLLAFLSHPISAAVSAQELLKGFTATPDSSVSSFQPLLSDPVGNYSLGFLRVDRTQLSLAVIHVPSQEQLWIAGKSPLARWSSKTRLSFNGSLVISDSNKGVLWSSYTDGSRVRLSNTSNLLIEAVDGGNSLMLWQSFDFPYNTLMESQNFTSAMTLVSSNGLYSMKLGPDFIGYYAKFVDNSDPGVLYFQHNPMEAKARVLKGQGPIQIMLSPNGFLGMYQNGSTPVDVQPFSTFQQPGTGSRRLRLEPDGNLI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G188420`
TK1151 ID	TkA08G188420
OH-1004 ID	LXL04_011447
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	26.700
Protein coverage (%)	TK1151 95.250 / OH-1004 45.692 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G188420

Location Chr08:49228938-49230684 (-)

Description Similar to At5g35370: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03700`	PAN domain-containing protein At5g03700.	No verified direct reference in this release
`At1g11280`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280.	No verified direct reference in this release
`At1g61360`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360.	No verified direct reference in this release
`UniProt: P0DH86`	Female specificity determinant of self-incompatibility.	No verified direct reference in this release
`At4g21370`	Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011447 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34300

ath:AT2G19130

ath:AT4G32300

ath:AT5G24080

ath:AT5G35370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.493

Rank 1 · TkA08G188420 · TK1151

Cell membrane0.276

Rank 2 · TkA08G188420 · TK1151

Endoplasmic reticulum0.122

Rank 3 · TkA08G188420 · TK1151

Cytoplasm0.068

Rank 4 · TkA08G188420 · TK1151

Plastid0.030

Rank 5 · TkA08G188420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin76-170 aa

PF00954S_locus_glycop247-301 aa

PF08276PAN_2272-299 aa

PF08276PAN_2327-369 aa

PF00954S_locus_glycop332-362 aa

PF00024PAN_1333-376 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G188420	`PF01453`	B_lectin	76	170	3.6e-11	44.2
TkA08G188420	`PF00954`	S_locus_glycop	247	301	8.4e-07	30.2
TkA08G188420	`PF08276`	PAN_2	272	299	0.011	16.6
TkA08G188420	`PF08276`	PAN_2	327	369	0.011	16.6
TkA08G188420	`PF00954`	S_locus_glycop	332	362	8.4e-07	30.2
TkA08G188420	`PF00024`	PAN_1	333	376	0.00015	22.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZR8`	Arabidopsis thaliana	sp\|Q9LZR8\|Y5370_ARATH PAN domain-containing protein At5g03700	52.500%	Swiss-Prot	High
`Q9SXB3`	Arabidopsis thaliana	sp\|Q9SXB3\|Y1112_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280	27.800%	Swiss-Prot	Low
`O64784`	Arabidopsis thaliana	sp\|O64784\|Y1136_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61360	27.300%	Swiss-Prot	Low
`P0DH86`	Arabidopsis thaliana	sp\|P0DH86\|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK	24.400%	Swiss-Prot	Low
`P0DH87`	Arabidopsis thaliana	sp\|P0DH87\|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK	24.400%	Swiss-Prot	Low

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