TkA08G185430 | RubberDandelionOmics

Gene overview

TkA08G185430

Reference: TK1151 Chr: Chr08 Coordinates: 48465883-48475367 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1318 bp · TkA08G185430|TK1151|cDNA

TCAATGTGCCGTAACATAAAAATATTAATATTCGTTGTTAATGAACTGATGAAGTAGACTAGTCTACTGTAAGCTATATGTTTCGTCCATTCCCCGCCATCACTTCAATAAGACGGTCATGAGCTCCGACACCAGCCACCGGTGGTGGCAGACGTGGGGGGTTTGGGAGGTGGTGTCCGTTCTGCTACTCGGCCAGGCTATCTCTTTTATATTAGCTCTTCTGAACTTTACTTCATCTCTAACCGCCAACCTTGATTCCT...

CDS

Download CDS FASTA

1041 bp · TkA08G185430|TK1151|CDS

ATGAGCTCCGACACCAGCCACCGGTGGTGGCAGACGTGGGGGGTTTGGGAGGTGGTGTCCGTTCTGCTACTCGGCCAGGCTATCTCTTTTATATTAGCTCTTCTGAACTTTACTTCATCTCTAACCGCCAACCTTGGTGCTAATTCTCCTGTAACTCTAGCACTTTTAGGCTATCTGGCATTAACCTTCATCTATGGAAGCATCTTGTTGTATCAGCGCCACAAACTCATTATTCCTTGGTATTGGTATGCTTTGTTAGC...

Protein

Download Protein FASTA

346 aa · TkA08G185430|TK1151|PROTEIN

MSSDTSHRWWQTWGVWEVVSVLLLGQAISFILALLNFTSSLTANLGANSPVTLALLGYLALTFIYGSILLYQRHKLIIPWYWYALLAFFDVQGNYLFNSAYYFSSITSVALLDCWSIAWVMLFTWIFLGAKYSLWQFFGASVCGAGLCLVLLSDAGVGGGGGSNPLLGDMLVIAATILFALTNVGEEYCVKKKCGVEVLAMLGVFGVFFSIIEIVIFERKSLEAVTWSAELIVTFVGFMVGFLTFYSMTPLVLKTSGSTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G185430`
TK1151 ID	TkA08G185430
OH-1004 ID	LXL04_014832
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	59.700
Protein coverage (%)	TK1151 95.376 / OH-1004 98.795 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G185430`
Location	Chr08:48465883-48475367 (+)
Description	Similar to SLC35F1: Solute carrier family 35 member F1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014832` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0015871 choline transport Biological Process GO:0160255 tRNA queuosine(34) biosynthetic process from salvaged queuine Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0015220 choline transmembrane transporter activity Molecular Function GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference	hsa:222553 hsa:54733 mmu:215085 mmu:72022 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.399

Rank 1 · TkA08G185430 · TK1151

Golgi apparatus0.216

Rank 2 · TkA08G185430 · TK1151

Cell membrane0.182

Rank 3 · TkA08G185430 · TK1151

Cytoplasm0.156

Rank 4 · TkA08G185430 · TK1151

Endoplasmic reticulum0.154

Rank 5 · TkA08G185430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06027SLC35F16-303 aa

PF00892EamA25-151 aa

PF08627CRT-like75-219 aa

PF00892EamA167-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G185430	`PF06027`	SLC35F	16	303	2.2e-85	287.6
TkA08G185430	`PF00892`	EamA	25	151	5.8e-12	46.8
TkA08G185430	`PF08627`	CRT-like	75	219	3.5e-08	33.5
TkA08G185430	`PF00892`	EamA	167	302	5.8e-12	46.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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